Bioinformatics Lab @ Wilmer Institute, Johns Hopkins University

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TATA has 203 co-regulatory transcription factors (TFs)

Summary Table (Download Table)

Co-regulatory TF Tissue -log(P)
AFP1 colon 9.40307
AFP1 placenta 11.3306
AHR/ARNT muscle 7.04704
ALPHA-CP1 brain 8.03295
ALPHA-CP1 small_intestine 8.42242
ALX-4 colon 8.97044
AMEF-2 soft_tissue 6.34535
AP-1 heart 15.787
AP-1 muscle 15.6531
AP-1 tongue 6.46736
AP-2 thymus 7.73464
AP-2GAMMA muscle 6.73053
AP-4 muscle 9.07937
AR heart 10.1295
AREB6 muscle 11.3895
ARP-1 heart 8.12382
ARP-1 muscle 10.7245
ARP-1 small_intestine 6.38451
ATF peripheral_nervous_system 6.24854
ATF placenta 13.6564
ATF tongue 8.68195
ATF-1 placenta 8.21286
ATF6 muscle 6.61982
BACH1 tongue 6.23985
BRN-2 brain 7.66024
BRN-2 eye 8.39371
C-MYB muscle 7.70407
C-REL muscle 8.13481
C/EBPALPHA heart 9.3534
C/EBPALPHA small_intestine 7.95031
C/EBPBETA heart 9.5415
C/EBPBETA larynx 7.65802
C/EBPBETA muscle 12.1428
C/EBPBETA placenta 6.38015
C/EBPBETA soft_tissue 6.85457
C/EBPGAMMA lung 8.20189
C/EBPGAMMA soft_tissue 8.44017
CDC5 kidney 7.73381
CDP colon 12.177
CDP mammary_gland 7.88807
CDP_CR3+HD muscle 8.63138
CHOP-C/EBPALPHA small_intestine 8.38785
CHX10 placenta 8.58741
COUP-TF/HNF-4 liver 8.83228
CRE-BP1 placenta 7.51868
CRE-BP1/C-JUN placenta 6.68809
CREB peripheral_nervous_system 9.78474
CREB placenta 7.92442
CREB soft_tissue 6.80668
CRX small_intestine 9.40666
E12 peripheral_nervous_system 9.63617
E2F small_intestine 6.77628
E2F-1/DP-1 bone_marrow 6.42456
E2F-4/DP-1 small_intestine 6.93781
E2F-4/DP-2 bone_marrow 6.64088
E47 larynx 7.41989
E47 small_intestine 8.2337
EF-C muscle 8.77324
ELF-1 bone_marrow 8.34718
ER muscle 8.83733
ER placenta 14.3499
ERR_ALPHA small_intestine 6.99812
FAC1 pancreas 6.39131
FOXD3 small_intestine 11.5631
FOXJ2 small_intestine 7.37724
FOXO1 muscle 6.19003
FOXO1 soft_tissue 12.2713
FOXO3 small_intestine 7.13332
FOXO3 soft_tissue 7.44562
FOXO4 soft_tissue 11.711
FREAC-3 small_intestine 8.67077
FREAC-7 kidney 9.88422
GATA-4 stomach 6.47079
GATA-6 heart 6.42173
GCNF colon 8.51396
GCNF kidney 7.99606
GCNF small_intestine 7.29105
GR heart 13.3012
HAND1/E47 soft_tissue 6.71411
HFH-3 small_intestine 7.98763
HFH-4 small_intestine 9.98013
HIF-1 bone 9.83883
HMG_IY kidney 6.47588
HNF-1 kidney 11.6623
HNF-1 liver 10.5542
HNF-1 small_intestine 11.8121
HNF-1 spleen 8.06925
HNF-3ALPHA liver 7.67737
HNF-3ALPHA small_intestine 8.73437
HNF-4ALPHA colon 7.05473
HNF-4ALPHA muscle 8.58247
HOXA4 muscle 6.58641
HSF1 heart 7.86086
LBP-1 larynx 7.43226
LBP-1 muscle 11.0243
LEF-1 colon 6.53629
LF-A1 bone 6.68996
LF-A1 placenta 6.43122
LHX3 kidney 7.57584
LHX3 placenta 8.23349
LHX3 skin 7.57306
LMO2_COMPLEX heart 6.58705
LXR muscle 7.2788
MEF-2 colon 8.50915
MEF-2 heart 18.8427
MEF-2 muscle 41.1865
MEIS1B/HOXA9 colon 9.08517
MEIS1B/HOXA9 muscle 6.62768
MEIS1B/HOXA9 small_intestine 6.57507
MYOD peripheral_nervous_system 10.286
MZF1 lung 6.86731
NCX bone 6.24491
NERF1A larynx 6.21489
NF-AT peripheral_nervous_system 10.1655
NF-E2 eye 6.97633
NF-E2 liver 7.59416
NF-KAPPAB muscle 8.4131
NF-KAPPAB spleen 6.76866
NF-KAPPAB_(P50) heart 6.42446
NF-KAPPAB_(P65) larynx 6.52181
NF-KAPPAB_(P65) muscle 8.76845
NF-Y brain 7.44902
NF-Y small_intestine 8.34098
NKX2-2 ovary 7.41174
NKX3A small_intestine 12.6524
NKX6-1 colon 7.22488
OCT-1 colon 7.76855
OCT-1 eye 7.89242
OCT-1 heart 9.89785
OCT-1 muscle 7.74755
OCT-1 pancreas 7.11246
OCT-1 small_intestine 8.13561
P53 muscle 10.3793
PAX-1 muscle 7.97763
PAX-2 small_intestine 6.31879
PAX-6 kidney 8.86963
POU3F2 heart 10.3821
POU3F2 kidney 8.03505
POU3F2 placenta 7.2106
PPARG heart 6.42491
PU.1 muscle 7.08332
RFX1 heart 11.071
RFX1 muscle 6.26142
RFX1 pancreas 8.47774
RFX1 small_intestine 7.277
RORALPHA2 muscle 6.45333
RREB-1 bone 10.9943
RREB-1 heart 8.97671
RREB-1 muscle 7.29376
RREB-1 small_intestine 9.03342
RSRFC4 bone 11.735
RSRFC4 brain 6.26958
RSRFC4 colon 6.90518
RSRFC4 muscle 20.3019
SF-1 muscle 7.89183
SF-1 soft_tissue 7.8278
SMAD-4 muscle 6.66119
SMAD-4 skin 7.32522
SP1 bone 7.59794
SREBP-1 brain 7.94726
SREBP-1 muscle 7.42458
SREBP-1 peripheral_nervous_system 6.43325
SRF larynx 11.6752
SRF muscle 29.8598
SRY colon 7.18279
SRY small_intestine 11.1591
SRY soft_tissue 6.99072
STAT5A lung 6.75757
STAT5B_(HOMODIMER) heart 8.87776
STAT6 lung 7.06488
TAL-1ALPHA/E47 muscle 8.38446
TAL-1BETA/E47 heart 8.26291
TAL-1BETA/E47 muscle 6.60705
TAL-1BETA/ITF-2 muscle 7.5491
TATA bone 6.28209
TATA larynx 6.35441
TATA muscle 8.36981
TAX/CREB bone 7.349
TBP bone 10.4502
TBP colon 7.00114
TBP muscle 10.0178
TBP small_intestine 7.0556
TBP soft_tissue 11.9252
TCF-4 colon 7.38214
TCF-4 pancreas 7.092
TCF11/MAFG liver 6.31981
TEF eye 9.0393
TEF peripheral_nervous_system 6.68602
TEF-1 bone 16.7502
TEF-1 larynx 6.90445
TEF-1 muscle 9.53373
TFII-I muscle 8.11832
TFIIA brain 12.7449
TGIF heart 7.04141
TGIF peripheral_nervous_system 6.44499
TITF1 eye 6.82769
TITF1 placenta 9.23261
TITF1 small_intestine 13.6712
TST-1 muscle 10.5714
USF2 pancreas 6.52031
VDR brain 8.75638
VDR lung 6.81152
ZID muscle 9.6263

Distribution of Co-regulatory TFs

Description: this pie chart displays the distribution of co-regulatory transcription factors (TFs) in different tissues.

Color schema: the tissue with the largest percentage of co-regulatory TFs is colored dark red whereas the tissue with the smallest percentage of co-regulatory TFs is colored dark blue. Tissues with intermediate percentages of co-regulatory TFs are colored from light red to yellow and cyan and then to light blue.