Bioinformatics Lab @ Wilmer Institute, Johns Hopkins University

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CDP has 132 co-regulatory transcription factors (TFs)

Summary Table (Download Table)

Co-regulatory TF Tissue -log(P)
POU3F2 uterus 7.68342
POU3F2 stomach 6.32409
TBP spleen 6.38152
RSRFC4 spleen 10.1163
TCF11 soft_tissue 6.95432
SF-1 soft_tissue 7.38993
RORALPHA1 soft_tissue 6.76442
OSF2 soft_tissue 6.74815
WHN small_intestine 7.46455
TEF small_intestine 7.18678
SRY small_intestine 7.10754
POU3F2 small_intestine 8.97229
PBX-1 small_intestine 7.51139
NR2E3 small_intestine 7.86957
NKX6-2 small_intestine 9.72127
NF-AT small_intestine 7.4568
MRF-2 small_intestine 6.65644
MIF-1 small_intestine 7.43566
LHX3 small_intestine 17.2252
HNF-1 small_intestine 6.67268
HFH-3 small_intestine 6.78202
EF-C small_intestine 8.15907
CART-1 small_intestine 6.45335
C/EBP small_intestine 7.69168
SRY skin 7.29602
SOX-9 skin 6.72907
TGIF placenta 7.28186
POU3F2 placenta 6.22015
PAX-2 placenta 7.58097
LHX3 placenta 8.95015
GATA-6 placenta 6.57362
FAC1 placenta 7.03414
CHX10 placenta 6.7773
BSAP placenta 6.2435
TBP peripheral_nervous_system 8.6508
SRY peripheral_nervous_system 7.69111
RREB-1 peripheral_nervous_system 7.69987
RP58 peripheral_nervous_system 7.36461
PPAR peripheral_nervous_system 7.13559
POU3F2 peripheral_nervous_system 7.46585
NKX3A peripheral_nervous_system 7.75214
NF-Y peripheral_nervous_system 11.8604
IPF1 peripheral_nervous_system 9.37501
HSF2 peripheral_nervous_system 8.89687
GATA-1 peripheral_nervous_system 7.44175
FAC1 peripheral_nervous_system 10.713
E47 peripheral_nervous_system 7.25338
BRN-2 peripheral_nervous_system 6.84917
ALPHA-CP1 peripheral_nervous_system 10.2478
HFH-3 pancreas 7.17594
FOXJ2 pancreas 6.26751
TITF1 muscle 7.91604
TEF muscle 12.7476
PBX-1 muscle 8.07573
OCT-1 muscle 8.2344
HSF1 muscle 7.96982
GR muscle 6.88856
CRX muscle 6.40465
CDP_CR3+HD muscle 10.5
CDP_CR1 muscle 6.8821
C/EBPBETA muscle 12.9793
C/EBPALPHA muscle 13.9631
C/EBP muscle 13.2431
ALX-4 muscle 8.72179
TBP mammary_gland 7.95906
TATA mammary_gland 7.88807
SMAD-3 mammary_gland 8.32647
RSRFC4 mammary_gland 10.9986
MEF-2 mammary_gland 7.13928
MRF-2 lung 8.75249
STATX liver 6.62887
HNF-4ALPHA liver 11.5469
HNF-3ALPHA liver 6.57739
HNF-1 liver 20.9496
COUP-TF/HNF-4 liver 7.55889
ARP-1 liver 6.6417
XBP-1 kidney 8.19994
PAX-8 kidney 6.51228
E4BP4 kidney 8.48062
PBX-1 heart 7.5574
NKX6-2 heart 7.55406
MIF-1 heart 6.21448
MEF-2 heart 6.63234
LMO2_COMPLEX heart 6.37965
GATA-6 heart 14.4875
GATA-1 heart 8.60131
E2F heart 6.46737
AP-1 heart 7.14317
TEF eye 6.3566
RORALPHA1 eye 6.99747
OCT-1 eye 8.88712
GATA-1 eye 10.2419
CRX eye 6.64335
CHX10 eye 18.0681
C/EBP eye 8.13094
TST-1 colon 6.97487
TEF colon 8.5249
TBP colon 13.2869
TATA colon 12.177
SF-1 colon 6.3718
OCT-X colon 9.54774
OCT-1 colon 12.6139
NKX6-1 colon 11.6957
MRF-2 colon 15.673
IRF1 colon 8.68698
HNF-6 colon 10.312
HNF-3ALPHA colon 6.55167
HNF-1 colon 17.3554
HFH-3 colon 7.62228
GCNF colon 11.6473
FOXO4 colon 18.5433
FOXJ2 colon 6.20251
CDP colon 7.53143
ALX-4 colon 13.8605
AFP1 colon 15.1635
TST-1 brain 14.9481
TAL-1ALPHA/E47 brain 8.3426
STAT6 brain 7.31129
SRF brain 6.35253
POU3F2 brain 10.9604
PAX-8 brain 11.4943
OCT-1 brain 11.464
NRSF brain 8.00621
GCM brain 7.6992
GATA-6 brain 6.42948
E4BP4 brain 11.9341
CDC5 brain 6.33709
C/EBPALPHA brain 6.98435
NKX6-2 blood 17.6386
ELF-1 blood 6.29595
CART-1 blood 6.35295
C/EBPGAMMA blood 6.20737

Distribution of Co-regulatory TFs

Description: this pie chart displays the distribution of co-regulatory transcription factors (TFs) in different tissues.

Color schema: the tissue with the largest percentage of co-regulatory TFs is colored dark red whereas the tissue with the smallest percentage of co-regulatory TFs is colored dark blue. Tissues with intermediate percentages of co-regulatory TFs are colored from light red to yellow and cyan and then to light blue.