EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS177-00625

Organism

Homo sapiens

Tissue/cell

SK-N-SH_RA

Coordinate

chr1:54778370-54779370

Target genes

Number: 15
Name	Ensembl ID

LRRC42	ENSG00000116212
HSPB11	ENSG00000081870
RP1	ENSG00000219102
TMEM59	ENSG00000116209
TCEANC2	ENSG00000116205
RP4	ENSG00000225183
AL353898.3	ENSG00000237611
AL161915.1	ENSG00000212670
CDCP2	ENSG00000157211
AL357673.1	ENSG00000248835
MRPL37	ENSG00000116221
CYB5RL	ENSG00000215883
RP11	ENSG00000256407
RP5	ENSG00000225632
SSBP3	ENSG00000157216

dbSUPER

Number of super-enhancer constituents: 19
ID	Coordinate	Tissue/cell

SE_05919	chr1:54774524-54779362	Brain_Hippocampus_Middle
SE_25961	chr1:54777883-54779032	Duodenum_Smooth_Muscle
SE_26701	chr1:54778088-54778640	Esophagus
SE_26701	chr1:54778659-54779517	Esophagus
SE_28122	chr1:54777948-54779424	Fetal_Intestine
SE_29698	chr1:54777447-54779582	Fetal_Muscle
SE_31383	chr1:54778222-54779256	Gastric
SE_33414	chr1:54778092-54781865	H2171
SE_41585	chr1:54778237-54779521	LNCaP
SE_42582	chr1:54778106-54779298	Lung
SE_46626	chr1:54778186-54778655	Ovary
SE_46626	chr1:54778710-54779110	Ovary
SE_46626	chr1:54779143-54779451	Ovary
SE_50141	chr1:54778164-54779293	Sigmoid_Colon
SE_52383	chr1:54778080-54779517	Small_Intestine
SE_63284	chr1:54754699-54809827	NCI-H82
SE_65414	chr1:54777861-54779388	Pancreatic_islets
SE_66951	chr1:54778092-54781865	H2171
SE_68686	chr1:54778080-54779456	H9

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I054309

chr1

54775274

54781137

Enhancer Sequence

CACAAGTCCT GAGGCCAGTG TTCAGACAAG ACCACCACAG CCATGTCAGG GGGCTACCAG 60
GCCTCACAAG CTTGGGTCCC ACCTGGGAGC CAGAGCCCAC AGCACAGTGC CATACTGCAG 120
CCTTTGGGTG TCTCTCCCCT CTGAGCTCCC CCTCCAGTGG GGGTTGATTG GTCCAGCTTC 180
CTGGAAATGT CTCTTCCACT TTGAATCCAC TTCAGAAAGG CAGGCCCAGG AGGGAGGCCA 240
GGAGGGGGTG GGATGGGAAG GAACATCCTG TCTGCATCAG AGCAGGGGAG GTGGCCCTGA 300
GCCTGCCCAC GTGTGCCTGG AGCTTTTTTT TTTTTTTTTT TTTCCATTGA GCAGGAAGTG 360
TTCATTCCAC CGACAAACAA GCATCTGGGG TCGTGCTAGG GTTAGGGCGG TGGAGCCAGC 420
TCTGATTTGT AGAAGTGAAC AATCCAAGAC AATGGGTGTA CAACGGCAGA GAAATCAGCT 480
CCAGATGCAG GCCAGAGACA GCTGCCCAGG GACCAATCGG GGTAATCAAT CCTGTTGATA 540
TGTTTGTTCT CCAAAGAAGA ACCTGGGGGA GGGGGCTGCA GCCTCTGCCT CGCCAGACAA 600
TGGAAGGCAG CTGGGAGCAC AGTCTATAAC CCTTCTTTCT GATACAGTCT AGGGCTCCTG 660
CTTTCTCTTC TGTCTCAAGG CTTCCCTGCT CCTCAGCCAG GAACTAGGGG GGCTCACACC 720
GAAGCTGTGT GCCTGTGCTT TTTTTTTTTT TTTTTTTTTT TTTTCTTTTT AAAGAGCTGG 780
GGTCTCACTA TGTTGCCGAG GCTGGGTTAA AACTCCTGGG CTCAAACAAT CTTCCCACCT 840
CAGCCTCCCG AGTAGCTATG CCTATGCTTT TTGACATCAA CAGTCAAGTA CTCTGGGGTC 900
AATGCCTAAG GTCTTGCACA AAAGCACGGG GGCCTGGAGT GTTCCTGCCC TGCAGCCGTA 960
GGCTGCCCAT CACTTCTGTG CAGTGCTCGT AAGCAGATGC 1000