EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS177-00368

Organism

Homo sapiens

Tissue/cell

SK-N-SH_RA

Coordinate

chr1:29157220-29157840

Target genes

Number: 25
Name	Ensembl ID

RP1	ENSG00000229820
U6atac	ENSG00000221216
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
snoU13	ENSG00000238821
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNORA61	ENSG00000207311
SNORA16A	ENSG00000207070
SNHG12	ENSG00000197989
RAB42	ENSG00000188060
TAF12	ENSG00000120656
RP11	ENSG00000229388
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492
OPRD1	ENSG00000116329
EPB41	ENSG00000159023
RP4	ENSG00000225616
Y	ENSG00000206704
TMEM200B	ENSG00000253304
SRSF4	ENSG00000116350
MECR	ENSG00000116353
PTPRU	ENSG00000060656

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

NFAT5	MA0606.1	chr1:29157624-29157634	ATTTTCCATT	+	6.02
NFATC1	MA0624.1	chr1:29157624-29157634	ATTTTCCATT	+	6.02
NFATC3	MA0625.1	chr1:29157624-29157634	ATTTTCCATT	+	6.02

Enhancer Sequence

TGTAAAAAAC ACAATATCTA CAAAGTGCTT TAAACGAGGC ATACCTGTAT ATGGAGAGGT 60
CAAAGAAGAG GAGACAAATG AGCAGAGGAC TGTTGCTTGG AGGAAGAGTG TTTTAGGCAG 120
AGGGAACAGC AAGGGCAAAG GTTAAGGGGG ATGATGCTGT ATGGCTTTAG CACAGGGCCT 180
GGCCCACAGC AAGAAGCCAT TGGTGATAAT GAGGCCTTTT GGATCATTGC CCAGCACCTG 240
GGAACCAGGG CAGGAATTAA GCCAGAGCGG AGATGCTGCT TCTCCTGGCC CCACCAGATG 300
CTGTCCCCAC CAGATGCCCC TGCAGGACAG ATGGAGATAA TCTGTTTCCC TTGGTTACAA 360
AAACTCATCC TCCCACAGTG CTGGGAAATA CCCCACATCT AGTGATTTTC CATTCCTCCC 420
TGAGGGGAGC GAATGGAGCT GTCCTGCTGG GAGGGGCAGG TTAGCCACAA GACACTCCTT 480
CCACCTGCCT AGGCCTTGTT GTCCCATATA AGAGAGGGCT CGGCCTGGTG TGGTGGCTCA 540
CACCTGTAAG CCCAGCAATT TGGTAGGCCG AGGTGGGTGG ATCACGAGGT CAGGAGATGG 600
AGACCATCCT GGCCAACATG 620