EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS165-01459

Organism

Homo sapiens

Tissue/cell

Ramos

Coordinate

chr1:234743600-234744190

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

MAFG	MA0659.1	chr1:234744009-234744030	GTTATGCTGCTTCAGCACATG	-	6.12
TFAP2A	MA0003.3	chr1:234744056-234744067	CGCCTCAGGCA	+	6.62

dbSUPER

Number of super-enhancer constituents: 93
ID	Coordinate	Tissue/cell

SE_00104	chr1:234733810-234745462	Adipose_Nuclei
SE_00998	chr1:234742816-234749635	Adrenal_Gland
SE_01710	chr1:234742835-234745543	Aorta
SE_02269	chr1:234737242-234745497	Astrocytes
SE_02950	chr1:234742848-234745673	Bladder
SE_03378	chr1:234739221-234745380	Brain_Angular_Gyrus
SE_03881	chr1:234734271-234745371	Brain_Anterior_Caudate
SE_04834	chr1:234734193-234745406	Brain_Cingulate_Gyrus
SE_06101	chr1:234734045-234745454	Brain_Hippocampus_Middle
SE_06706	chr1:234734181-234745703	Brain_Hippocampus_Middle_150
SE_08090	chr1:234734183-234745459	Brain_Inferior_Temporal_Lobe
SE_08897	chr1:234742921-234744638	Brain_Mid_Frontal_Lobe
SE_09339	chr1:234734274-234751090	CD14
SE_10711	chr1:234741495-234745448	CD19_Primary
SE_11381	chr1:234734128-234750146	CD20
SE_12020	chr1:234741410-234744665	CD3
SE_12504	chr1:234743684-234743870	CD34_adult
SE_12504	chr1:234743926-234744080	CD34_adult
SE_12504	chr1:234744094-234744808	CD34_adult
SE_13004	chr1:234739784-234745343	CD34_Primary_RO01480
SE_13376	chr1:234734222-234745402	CD34_Primary_RO01536
SE_14185	chr1:234737907-234745365	CD34_Primary_RO01549
SE_14428	chr1:234733996-234745420	CD4_Memory_Primary_7pool
SE_15451	chr1:234740285-234745658	CD4_Memory_Primary_8pool
SE_15899	chr1:234741483-234745460	CD4_Naive_Primary_7pool
SE_16485	chr1:234741173-234745417	CD4_Naive_Primary_8pool
SE_16893	chr1:234739273-234745501	CD4p_CD225int_CD127p_Tmem
SE_17359	chr1:234734271-234745561	CD4p_CD25-_CD45RAp_Naive
SE_17859	chr1:234734122-234750199	CD4p_CD25-_CD45ROp_Memory
SE_18634	chr1:234734221-234745436	CD4p_CD25-_Il17-_PMAstim_Th
SE_19444	chr1:234737902-234745556	CD4p_CD25-_Il17p_PMAstim_Th17
SE_20372	chr1:234741362-234745590	CD56
SE_20768	chr1:234734398-234745501	CD8_Memory_7pool
SE_21533	chr1:234741263-234745581	CD8_Naive_7pool
SE_21996	chr1:234740091-234745512	CD8_Naive_8pool
SE_22648	chr1:234734546-234745443	CD8_primiary
SE_23161	chr1:234741530-234750142	Colon_Crypt_1
SE_23851	chr1:234742847-234749470	Colon_Crypt_2
SE_24712	chr1:234739620-234748509	Colon_Crypt_3
SE_25553	chr1:234734251-234745624	DND41
SE_25783	chr1:234734218-234745408	Duodenum_Smooth_Muscle
SE_26619	chr1:234741438-234750221	Esophagus
SE_27616	chr1:234734124-234751576	Fetal_Intestine
SE_28535	chr1:234734170-234745499	Fetal_Intestine_Large
SE_29568	chr1:234734271-234745626	Fetal_Muscle
SE_31132	chr1:234734462-234745555	Fetal_Thymus
SE_31446	chr1:234742730-234750142	Gastric
SE_33441	chr1:234734280-234750749	H2171
SE_33813	chr1:234736018-234745533	HCC1954
SE_34565	chr1:234742848-234749475	HCT-116
SE_35114	chr1:234741556-234745523	HeLa
SE_35855	chr1:234737322-234745644	HMEC
SE_36944	chr1:234734147-234751491	HSMMtube
SE_38070	chr1:234734296-234745614	HUVEC
SE_38991	chr1:234737500-234745445	IMR90
SE_40118	chr1:234741380-234745599	K562
SE_40608	chr1:234741604-234750263	Left_Ventricle
SE_41883	chr1:234742806-234745517	LNCaP
SE_42182	chr1:234742738-234749809	Lung
SE_43663	chr1:234740952-234750421	MM1S
SE_44195	chr1:234734270-234745561	NHDF-Ad
SE_44801	chr1:234734858-234745353	NHLF
SE_45603	chr1:234734184-234745585	Osteoblasts
SE_47210	chr1:234734194-234744954	Panc1
SE_47535	chr1:234742828-234749553	Pancreas
SE_48110	chr1:234741531-234749641	Psoas_Muscle
SE_48634	chr1:234742737-234749644	Right_Atrium
SE_49504	chr1:234742875-234747450	Right_Ventricle
SE_50102	chr1:234742770-234750294	Sigmoid_Colon
SE_51097	chr1:234734036-234745416	Skeletal_Muscle
SE_51731	chr1:234737896-234750732	Skeletal_Muscle_Myoblast
SE_52369	chr1:234741526-234745693	Small_Intestine
SE_53338	chr1:234741530-234749659	Spleen
SE_54569	chr1:234734175-234745449	Stomach_Smooth_Muscle
SE_55200	chr1:234742828-234749592	Thymus
SE_55820	chr1:234734375-234750724	u87
SE_56766	chr1:234741540-234748587	VACO_400
SE_57415	chr1:234742827-234749495	VACO_503
SE_57931	chr1:234741660-234748341	VACO_9m
SE_59078	chr1:234733327-234756529	Ly3
SE_60692	chr1:234734161-234749882	DHL6
SE_61082	chr1:234733038-234760511	HBL1
SE_61427	chr1:234732862-234761153	Toledo
SE_62293	chr1:234734011-234750557	Tonsil
SE_63226	chr1:234735240-234760338	GLC16
SE_63363	chr1:234735023-234761006	NCI-H69
SE_63516	chr1:234737878-234750746	HSMM
SE_64258	chr1:234737221-234745553	NHEK
SE_65887	chr1:234739458-234745400	Pancreatic_islets
SE_66481	chr1:234742145-234744498	Jurkat
SE_67204	chr1:234740952-234750421	MM1S
SE_67634	chr1:234734375-234750724	u87
SE_68347	chr1:234734483-234756465	TC32

Enhancer Sequence

GGAAACACAA AGAAATAAAA GGAAAAAGGT AACATAAGTG GCGGTGCACT GAAAGAGATC 60
ATTCTCTTCC TAACCCGAAA CAAAAGTCGT TACAGAATTC CTCCTCTCTA AAAGCACAGA 120
CAGAAAATAC TCATATACGA GTTTCAGGTG CACATGCAAC TTAAAACCTT CAGGCGTACG 180
GGATTCTGAG GCAGCAGACT GATTTAAAAT GGAGCCACTG AAAATGACAC GCTTGTAACT 240
GCCTGTTTGT ACACATGCAC AAAAGTACCC TCGTTTGCAC TCAACATGTG ACTGCTAATG 300
TCCCCCAATA GGTTAAAAGG TGACTGGTGC CCTCATGCTC CCATCCAAGA ATGTGCTGGG 360
AAAGGAAAAC CCCGTGTCAG AGCGTATCAG CCCAGTCTGA CTCATCTCTG TTATGCTGCT 420
TCAGCACATG AACACGTTGC CACCAAGCAC TGGTTCCGCC TCAGGCAGAT CAGGAAGTGG 480
GGTGTTTGTT GTTTCTGGGC TGGGGTAAAA TGGTGAATCC AAAGAACCAC CCTTCCTCTG 540
CTCTCCGTCC CCTTTTCTCC CCTAGACCCC CTCACTTCAC AGCCGCCCCT 590