EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS163-00042

Organism

Homo sapiens

Tissue/cell

PrEC

Coordinate

chr1:32403040-32403580

Target genes

Number: 2
Name	Ensembl ID

PTP4A2	ENSG00000184007
KHDRBS1	ENSG00000121774

TF binding sites/motifs

Number: 1

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ZNF263

MA0528.1

chr1:32403169-32403190

CTCTCAACTCTCTCCTCCCCC

6.19

dbSUPER

Number of super-enhancer constituents: 49
ID	Coordinate	Tissue/cell

SE_00185	chr1:32393819-32406495	Adipose_Nuclei
SE_01455	chr1:32402762-32404805	Adrenal_Gland
SE_03010	chr1:32402760-32404946	Bladder
SE_05505	chr1:32401726-32405042	Brain_Cingulate_Gyrus
SE_09496	chr1:32393936-32406601	CD14
SE_11611	chr1:32389155-32406399	CD20
SE_12303	chr1:32402474-32403520	CD3
SE_13610	chr1:32399896-32406342	CD34_Primary_RO01536
SE_14567	chr1:32391765-32406526	CD4_Memory_Primary_7pool
SE_18176	chr1:32389348-32406796	CD4p_CD25-_CD45ROp_Memory
SE_18474	chr1:32389295-32406605	CD4p_CD25-_Il17-_PMAstim_Th
SE_19618	chr1:32393839-32406027	CD4p_CD25-_Il17p_PMAstim_Th17
SE_20913	chr1:32395596-32406593	CD8_Memory_7pool
SE_22706	chr1:32386302-32406312	CD8_primiary
SE_24317	chr1:32402810-32404642	Colon_Crypt_2
SE_25246	chr1:32402106-32404738	Colon_Crypt_3
SE_25437	chr1:32389224-32406301	DND41
SE_26248	chr1:32399456-32403657	Duodenum_Smooth_Muscle
SE_27326	chr1:32402240-32405994	Esophagus
SE_28018	chr1:32399713-32407408	Fetal_Intestine
SE_29138	chr1:32399757-32407448	Fetal_Intestine_Large
SE_30289	chr1:32402028-32404024	Fetal_Muscle
SE_31027	chr1:32389104-32406257	Fetal_Thymus
SE_31788	chr1:32402242-32406025	Gastric
SE_32591	chr1:32393840-32406260	GM12878
SE_34572	chr1:32399535-32407470	HCT-116
SE_34675	chr1:32399419-32412649	HeLa
SE_37823	chr1:32399579-32405032	HSMMtube
SE_38810	chr1:32399868-32405038	HUVEC
SE_39509	chr1:32401992-32403350	Jurkat
SE_39960	chr1:32402190-32406243	K562
SE_41137	chr1:32402118-32406084	Left_Ventricle
SE_42547	chr1:32402181-32406072	Lung
SE_45230	chr1:32402011-32403737	NHLF
SE_46136	chr1:32399713-32406272	Osteoblasts
SE_47391	chr1:32395979-32411585	Panc1
SE_47857	chr1:32402861-32404686	Pancreas
SE_49021	chr1:32402662-32404989	Right_Atrium
SE_50456	chr1:32402047-32406256	Sigmoid_Colon
SE_51637	chr1:32393841-32406302	Skeletal_Muscle
SE_52642	chr1:32402096-32406241	Small_Intestine
SE_53748	chr1:32402104-32406261	Spleen
SE_55181	chr1:32402195-32404754	Thymus
SE_56686	chr1:32401996-32405004	u87
SE_57870	chr1:32402862-32404621	VACO_503
SE_59623	chr1:32331606-32430327	Ly4
SE_62431	chr1:32376082-32428121	Tonsil
SE_64663	chr1:32401983-32403783	NHEK
SE_66311	chr1:32401992-32403350	Jurkat

Enhancer Sequence

GGCCTCTAGG ATGCCTGCTC ACACACTGGA CACACGCCGG CACACCCTAC CACACTCCTG 60
CCTCTGCCAC GCACCTTCTC ACCGACACAC ACCATGTTCT CCCCCCACAC TCACCCGCTC 120
TTTACCACAC TCTCAACTCT CTCCTCCCCC ATTTACTCAC TCATTCTACC ACCACCCCTC 180
ATGCCCACAC GCTCCCCACA CACCCATACC CTCCCCTGCC CTCACCCACA TTCCCCCAAC 240
ATCGACACTG CCTCCCGACG CGCTCCCACT CCCCCCACCT CCTCGCACGG ACACTCAGCC 300
CTGTCCCCCA CTCACACGCC CTCCCTTCAC CAACTCACTC TCCCCCACGC TCGCACAGCT 360
CTCTCCCTTC CACACACACG AGCCCGCCCC TCGCTCACCC ACCCTCGCTC CCCCGCCCCG 420
GCCCGGCCCG GCCCTCCTTC CGGGGACGTG TCTCCGGCCT GCACTAATGG CTGCGGCGCC 480
TCCCGCCCTC CCCTTCCCCG AGGCCCCCGG CGCCGGCGCG GGGGCCGCCC GGGAGGGGCG 540