EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS161-01133

Organism

Homo sapiens

Tissue/cell

PC3

Coordinate

chr1:154988290-154988690

Target genes

Number: 32
Name	Ensembl ID

KCNN3	ENSG00000143603
PMVK	ENSG00000163344
PBXIP1	ENSG00000163346
PYGO2	ENSG00000163348
SHC1	ENSG00000160691
CKS1B	ENSG00000173207
FLAD1	ENSG00000160688
LENEP	ENSG00000163352
ZBTB7B	ENSG00000160685
DCST2	ENSG00000163354
DCST1	ENSG00000163357
RP11	ENSG00000232093
ADAM15	ENSG00000143537
EFNA4	ENSG00000243364
EFNA3	ENSG00000143590
EFNA1	ENSG00000169242
SLC50A1	ENSG00000169241
DPM3	ENSG00000179085
HMGN2P18	ENSG00000223452
TRIM46	ENSG00000163462
KRTCAP2	ENSG00000163463
MUC1	ENSG00000185499
THBS3	ENSG00000169231
GBAP1	ENSG00000160766
MTX1P1	ENSG00000236675
GBA	ENSG00000177628
FAM189B	ENSG00000160767
SCAMP3	ENSG00000116521
HCN3	ENSG00000143630
CLK2	ENSG00000176444
FDPS	ENSG00000160752
RUSC1	ENSG00000160753

dbSUPER

Number of super-enhancer constituents: 36
ID	Coordinate	Tissue/cell

SE_01029	chr1:154988462-154990583	Adrenal_Gland
SE_03571	chr1:154988621-154989810	Brain_Angular_Gyrus
SE_04371	chr1:154987765-154988723	Brain_Anterior_Caudate
SE_06112	chr1:154975116-154991667	Brain_Hippocampus_Middle
SE_12314	chr1:154988064-154990154	CD3
SE_14762	chr1:154987810-154991235	CD4_Memory_Primary_7pool
SE_17044	chr1:154988266-154990466	CD4p_CD225int_CD127p_Tmem
SE_17548	chr1:154971096-154992943	CD4p_CD25-_CD45RAp_Naive
SE_17979	chr1:154971185-154991480	CD4p_CD25-_CD45ROp_Memory
SE_18930	chr1:154975194-154992517	CD4p_CD25-_Il17-_PMAstim_Th
SE_19307	chr1:154987772-154991541	CD4p_CD25-_Il17p_PMAstim_Th17
SE_23265	chr1:154987700-154991838	Colon_Crypt_1
SE_23923	chr1:154987770-154990878	Colon_Crypt_2
SE_24954	chr1:154987109-154990899	Colon_Crypt_3
SE_26626	chr1:154971404-154992820	Esophagus
SE_31489	chr1:154971403-154990904	Gastric
SE_34425	chr1:154988065-154991244	HCT-116
SE_35099	chr1:154988199-154990950	HeLa
SE_41104	chr1:154988213-154990763	Left_Ventricle
SE_41600	chr1:154987379-154988421	LNCaP
SE_41600	chr1:154988587-154989388	LNCaP
SE_42490	chr1:154987731-154990762	Lung
SE_46942	chr1:154988458-154988942	Ovary
SE_47639	chr1:154988532-154989008	Pancreas
SE_48331	chr1:154988467-154990839	Psoas_Muscle
SE_48970	chr1:154988578-154990841	Right_Atrium
SE_50133	chr1:154971335-154992744	Sigmoid_Colon
SE_51640	chr1:154988537-154991041	Skeletal_Muscle
SE_52379	chr1:154971308-154992003	Small_Intestine
SE_53597	chr1:154988051-154990753	Spleen
SE_55030	chr1:154988571-154991195	Stomach_Smooth_Muscle
SE_59127	chr1:154971104-154991422	Ly3
SE_60203	chr1:154969567-154991253	Ly4
SE_61653	chr1:154971190-154991278	Toledo
SE_62469	chr1:154971183-154991923	Tonsil
SE_68767	chr1:154987922-154990961	H9

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I155015

chr1

154988190

154991390

Enhancer Sequence

GTGAGCAGCA AGGGGGGAAG GGCCCGGCAG GGGCCATGGG TAGGGGACAG GGTGGGAGGA 60
GATGGGGAAG AAGTTAGGAG ACCCGAGGTG GTGGTAGGTG GTCCTGGAGG GACTGGGGCA 120
TGGGTGGGTT ACTGGAGTGA GGAGAGCAGA AGAAAACAAG CCAGCAGGGG GTGGATCTGG 180
AGCATGGAGG ATTCGGTGCC CAGGAGGGCA GTGCTGGAAG CAGAGGAGTG GATAATGACA 240
AGGCCTAGTT AAGCTAGAGG TGAGCTAGCA GGGTATCTCC TGGGGCAATA GTGGGGTAAC 300
AAATGGTGAG GAACAGGGAT GGGACAAGGC CAGGGTGGGA TGACCAGGAG GAGCCAGGGA 360
TCCCATCCTG AACACCTCCC TGCCCCTCAC CCCTGCCTGT 400