EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS147-00058

Organism

Homo sapiens

Tissue/cell

NHEK

Coordinate

chr1:1238360-1238540

Target genes

Number: 32
Name	Ensembl ID

RP11	ENSG00000231702
HES4	ENSG00000188290
ISG15	ENSG00000187608
AGRN	ENSG00000188157
RNF223	ENSG00000237330
C1orf159	ENSG00000131591
MIR200B	ENSG00000207730
MIR200A	ENSG00000207607
TTLL10	ENSG00000162571
SDF4	ENSG00000078808
B3GALT6	ENSG00000176022
FAM132A	ENSG00000184163
RP5	ENSG00000260179
UBE2J2	ENSG00000160087
SCNN1D	ENSG00000162572
PUSL1	ENSG00000169972
ACAP3	ENSG00000131584
CPSF3L	ENSG00000127054
GLTPD1	ENSG00000224051
TAS1R3	ENSG00000169962
DVL1	ENSG00000107404
MXRA8	ENSG00000162576
AURKAIP1	ENSG00000175756
CCNL2	ENSG00000221978
RP4	ENSG00000224870
MRPL20	ENSG00000242485
ANKRD65	ENSG00000235098
TMEM88B	ENSG00000205116
VWA1	ENSG00000179403
ATAD3C	ENSG00000215915
ATAD3B	ENSG00000160072
TMEM240	ENSG00000205090

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

NR2C2	MA0504.1	chr1:1238513-1238528	TGAGGTCAGAGGTCA	+	7.88
Nr2f6	MA0677.1	chr1:1238514-1238528	GAGGTCAGAGGTCA	+	7.42
Rxra	MA0512.2	chr1:1238514-1238528	GAGGTCAGAGGTCA	+	6.88

dbSUPER

Number of super-enhancer constituents: 6
ID	Coordinate	Tissue/cell

SE_06507	chr1:1236723-1247565	Brain_Hippocampus_Middle
SE_07598	chr1:1236976-1245713	Brain_Hippocampus_Middle_150
SE_27141	chr1:1238016-1246673	Esophagus
SE_34541	chr1:1237396-1247366	HCT-116
SE_41826	chr1:1238504-1247919	LNCaP
SE_63340	chr1:1233821-1242180	NCI-H82

Enhancer Sequence

GGAGCAGATG GGAACCCGTG CTGAGATGGC AAATCCGGGC CCAGGTCACC CAGCCACGCC 60
CTCTGAGCCC CTGGGCGGTG CAGACACCGG CCTGCTTCTG GCCTGGACGC CCTCAAGGGG 120
CTGCCTCCCT CGGCCTCTCC CCCAACCCCA CCTTGAGGTC AGAGGTCAGT CGGCCCCTCA 180