EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS146-00262

Organism

Homo sapiens

Tissue/cell

NHDF

Coordinate

chr1:25572440-25572930

Target genes

Number: 13
Name	Ensembl ID

RP4	ENSG00000233419
SYF2	ENSG00000117614
RP3	ENSG00000261349
RHD	ENSG00000187010
SDHDP6	ENSG00000224183
RP11	ENSG00000259984
TMEM50A	ENSG00000183726
C1orf63	ENSG00000117616
SDHDP1	ENSG00000238084
RHCE	ENSG00000188672
TMEM57	ENSG00000204178
LDLRAP1	ENSG00000157978
MAN1C1	ENSG00000117643

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Arid5a	MA0602.1	chr1:25572838-25572852	CTAATATTGAAACT	+	6.38
Nr2f6	MA0677.1	chr1:25572748-25572762	TGACCTTTAACCCT	-	7.01
Rxra	MA0512.2	chr1:25572748-25572762	TGACCTTTAACCCT	-	7.04

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

SE_11736	chr1:25571453-25575276	CD20
SE_13531	chr1:25571796-25574991	CD34_Primary_RO01536
SE_18165	chr1:25571546-25575311	CD4p_CD25-_CD45ROp_Memory
SE_34964	chr1:25572253-25575162	HeLa

Enhancer Sequence

TGGCCAGGCT GGTATGGAAC GCCTGGCCTC AAGTGACCCA CCCGCCTCCG CCTCCGCCTC 60
CCCAAGTGCT GGGATTACAG AGGTGAGCCG CCGCGCCCGG CCTCCTAGGT CACTTAGGAT 120
ACTCGACAAT CCAATTTTAT TCAGTAATAA TGTCAACTAA AAGAAGGCGT GTTTTGATAT 180
TGTTCTTCCC AATCACGTTA ACTTAGAACC TTTAACTTAA TCATAACATT TAAAAGGCTC 240
CACCCACTAA GAACAGTCAG CCAATAGGAA AAAAAGTTCC CTACATCCTG AGCCATTTAA 300
CATCCAGTTG ACCTTTAACC CTAAAGAGAA TGCTGTCCAC TTAAATACAG GTAATGTCCT 360
CCCTCTTTCC TCCAAAAAGA TTTCGGGCAC TAAAGGAACT AATATTGAAA CTACACAGCA 420
ACGTTGGTTC CCTAGCCTAC TCATATACTG CCACCATACA TTACCACAAA TGGAAAGGTA 480
AATGACCCAC 490