EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS139-01604

Organism

Homo sapiens

Tissue/cell

Myotube

Coordinate

chr1:45266820-45267290

Target genes

Number: 19
Name	Ensembl ID

TMEM53	ENSG00000126106
C1orf228	ENSG00000198520
RNU5F	ENSG00000199377
RP4	ENSG00000259794
RNU5D	ENSG00000200169
KIF2C	ENSG00000142945
RPS8	ENSG00000142937
RP11	ENSG00000225721
SNORD46	ENSG00000200913
BEST4	ENSG00000142959
PLK3	ENSG00000173846
TCTEX1D4	ENSG00000188396
BTBD19	ENSG00000222009
PTCH2	ENSG00000117425
RP5	ENSG00000226499
CCNB1IP1P1	ENSG00000229815
EIF2B3	ENSG00000070785
HECTD3	ENSG00000126107
UROD	ENSG00000126088

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ZNF263	MA0528.1	chr1:45267238-45267259	GGAGGGGGAGGGGGAGGGAGG	+	6.84
ZNF263	MA0528.1	chr1:45267235-45267256	GATGGAGGGGGAGGGGGAGGG	+	8.2

dbSUPER

Number of super-enhancer constituents: 18
ID	Coordinate	Tissue/cell

SE_01831	chr1:45267054-45278224	Aorta
SE_04529	chr1:45267157-45270277	Brain_Anterior_Caudate
SE_06454	chr1:45263798-45280273	Brain_Hippocampus_Middle
SE_11912	chr1:45267237-45268435	CD3
SE_16953	chr1:45267025-45269626	CD4p_CD225int_CD127p_Tmem
SE_26084	chr1:45267146-45270191	Duodenum_Smooth_Muscle
SE_26880	chr1:45267071-45270568	Esophagus
SE_29688	chr1:45267031-45270060	Fetal_Muscle
SE_31689	chr1:45267126-45269239	Gastric
SE_34847	chr1:45264794-45276751	HeLa
SE_37253	chr1:45264597-45278304	HSMMtube
SE_41008	chr1:45267023-45270544	Left_Ventricle
SE_42249	chr1:45267046-45270620	Lung
SE_48811	chr1:45267069-45268825	Right_Atrium
SE_50290	chr1:45267058-45270081	Sigmoid_Colon
SE_52471	chr1:45267106-45270278	Small_Intestine
SE_53432	chr1:45267069-45268896	Spleen
SE_65466	chr1:45264359-45276830	Pancreatic_islets

Enhancer Sequence

AAAGGTGAAA GATGGTGATT CCCGCAGGGA TGAGAGTGAG GGAGAGAAGA CAGTCTTTTT 60
TTTTTTTTTT TTTTTTTTTG AGATGGAGTC TTGCTCTGTT GCCCAGGCTG GAGTGCAGTG 120
GCGCGATCTC GGCTCACTGC AATCTCTGCC TCCCGGGTTC AAGCAATTCT CCTGCCTCAG 180
CCTCCTGAGT AGCTGGGATT ACAGGCATGC ACCACCACGC CCGGCTAATT TTTGTATTTT 240
TAGTAGAGAC AGGGTTTCAC CCTGTTGGTC AGGCTGGTCT CAAACTCCTG ACCTTGTGAT 300
ACACCTGCCT TGGCCTCCCA AAGTGCTGGG ATTACAGGCG TGAGCCACTA CACCCAGCCG 360
AGAAGACAGT CTTAAGACCC AAAGCTGGGG CCCTGTTTCT TCCTCAGGGA GCACAGATGG 420
AGGGGGAGGG GGAGGGAGGG CTCACCAGGG GCTGAGGCAG TGGCTCTCTG 470