EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS134-01052

Organism

Homo sapiens

Tissue/cell

Mesendoderm

Coordinate

chr1:41176230-41176880

Target genes

Number: 14
Name	Ensembl ID

ZMPSTE24	ENSG00000084073
COL9A2	ENSG00000049089
SMAP2	ENSG00000084070
ZNF643	ENSG00000187801
RP1	ENSG00000260920
ZNF642	ENSG00000187815
RP11	ENSG00000238287
DEM1	ENSG00000164002
ZNF684	ENSG00000117010
RIMS3	ENSG00000117016
NFYC	ENSG00000066136
KCNQ4	ENSG00000117013
CITED4	ENSG00000179862
CTPS	ENSG00000171793

SNPs

Number: 1
ID	Chromosome	Position	Genome Version

rs10489167

chr1

41176466

hg19

dbSUPER

Number of super-enhancer constituents: 8
ID	Coordinate	Tissue/cell

SE_09912	chr1:41173992-41180691	CD14
SE_11310	chr1:41173187-41180749	CD20
SE_15194	chr1:41173670-41178324	CD4_Memory_Primary_7pool
SE_22820	chr1:41173545-41180177	CD8_primiary
SE_26108	chr1:41173936-41180309	Duodenum_Smooth_Muscle
SE_35491	chr1:41173792-41178431	HepG2
SE_59908	chr1:41156532-41180069	Ly4
SE_63017	chr1:41156198-41179996	Tonsil

Enhancer Sequence

TTCTTTTTAT TTGCAAATAT GGAATGAAGG TCATTGGAAC ATTTCTGCAG CAGACTCAGT 60
GTGGAGCCGT CAGCCAGCAG CACTTAGTCT CTGGGTACGG AAAAGGAGCA GGCCCTATTA 120
GAGGAGAAGT TTCGAGGGTG TCGATTTGCC TTCCCTAGCT TCCCCTCTAA TAAAGGATTT 180
ACCTTAGAGG ACTGATAGGA TTTAGATTCG GGGCTCTTGG AGTTGTAATG ATATAGCAAG 240
TCAAAGTTCC TGGATGCAGG CCTCTGTCGT TGCTTGCAAA AGTGACCTTG AAAAACTGCT 300
GGGGAGTTGA AAGATTGAAG GACAAAGTTT GTTTATACAG ATTTGGACTG AAAAGCTCTA 360
TTTAAGATGA AAAGAGACTG TACTTCTGAT ATTCAAGTCG AGTGGTTAGT AGGAATATGT 420
TATAGATTCA GATTAGGAAT TTTCAGGGAA TAAGACAATA GGGCTGCATT CATTCTCTCT 480
CCCACTCTTT TTACTTCCCT CCCCCCAGCA AAAAATTCTA AATTCTTTTG GTATGATAGC 540
TGAGTGAACT GCCTAACAGA TTCAGAATTC CTTGCATGCT ACCTTGTCTT CTTTGTAATC 600
TAGAGGGTTC TTAGTGAAGG GGATAGATAG TATTTTAGGA GTTCAGAGTA 650