EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS133-00982

Organism

Homo sapiens

Tissue/cell

melanoma

Coordinate

chr1:29064190-29064770

Target genes

Number: 22
Name	Ensembl ID

RP5	ENSG00000228589
DNAJC8	ENSG00000126698
ATPIF1	ENSG00000130770
MED18	ENSG00000130772
PHACTR4	ENSG00000204138
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
TRNAU1AP	ENSG00000180098
SNHG12	ENSG00000197989
RAB42	ENSG00000188060
TAF12	ENSG00000120656
RP11	ENSG00000229388
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492
OPRD1	ENSG00000116329
RP1	ENSG00000226852
EPB41	ENSG00000159023
RP4	ENSG00000225616
TMEM200B	ENSG00000253304
SRSF4	ENSG00000116350

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RREB1	MA0073.1	chr1:29064395-29064415	AGGGTGGGGGTGGATTGGGT	-	6.93
SP1	MA0079.4	chr1:29064245-29064260	TGGGGGCGGGGTCTC	-	6.16
SP4	MA0685.1	chr1:29064243-29064260	GGTGGGGGCGGGGTCTC	-	6.07
Sox3	MA0514.1	chr1:29064459-29064469	CCTTTGTTTT	+	6.02
ZNF263	MA0528.1	chr1:29064510-29064531	GGGGGAGGGGAAGCGGGAGGG	+	7.43

Enhancer Sequence

AAAGGTAAGT CCCGCTCCGC CGGTGGCCCT GAGCCGGGAG GGGGACGCGG GGCGGTGGGG 60
GCGGGGTCTC CGGGAAGCGC CCCGGGCGGA GGACCTTTCG GAAGCCGCTT AGTTCGCAGG 120
TGCCGCACAC TTAAGTATTT TGACCCTTTC GGTGTGTTCT TGCAGCTGGC GAACAGCTTT 180
TTCGCTAACA AGGAGTAATT CATTAAGGGT GGGGGTGGAT TGGGTTTTGA AACGCTCCAG 240
GTCCTTAGTT TCCTGTAGGT CTTAGAAGGC CTTTGTTTTT CATCCTCGTG GATCACTCTC 300
TGGAAGTACT CTCATGTGAT GGGGGAGGGG AAGCGGGAGG GAATGGAAAT CCAGAGGAGC 360
CAATAAAATG ACCTTTTTAG ATCAACTTGC TCTGGGTGGA GGGGGACATT TTCACTGGCG 420
ACTGTCGCTT CAGCATTCAC TGTCATCTCT TACCCTTTTG AAGTTCAATC TTACGTGCTT 480
TGTTAACTAG TAAGGTTTTT CTCTGGTTAG CATATATGAA CTAATTTGAA AGGAAGATTG 540
TAGGATTGGG ACACTCCTAA TTGAATTTTT TTTTCTTTAG 580