EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS131-00026

Organism

Homo sapiens

Tissue/cell

ME-1

Coordinate

chr1:1622870-1623880

Target genes

Number: 18
Name	Ensembl ID

ATAD3C	ENSG00000215915
ATAD3B	ENSG00000160072
ATAD3A	ENSG00000197785
AL645728.2	ENSG00000215791
SSU72	ENSG00000160075
AL645728.1	ENSG00000215014
AL645728.3	ENSG00000236684
C1orf233	ENSG00000228594
MIB2	ENSG00000197530
CDK11B	ENSG00000248333
SLC35E2B	ENSG00000189339
CDK11A	ENSG00000008128
RP1	ENSG00000227775
SLC35E2	ENSG00000215790
NADK	ENSG00000008130
GNB1	ENSG00000078369
CALML6	ENSG00000169885
TMEM52	ENSG00000178821

dbSUPER

Number of super-enhancer constituents: 23
ID	Coordinate	Tissue/cell

SE_11139	chr1:1621768-1627023	CD20
SE_13835	chr1:1622189-1625567	CD34_Primary_RO01536
SE_14478	chr1:1621974-1625465	CD4_Memory_Primary_7pool
SE_17401	chr1:1621758-1625700	CD4p_CD25-_CD45RAp_Naive
SE_17899	chr1:1621824-1625690	CD4p_CD25-_CD45ROp_Memory
SE_18811	chr1:1622112-1625743	CD4p_CD25-_Il17-_PMAstim_Th
SE_19243	chr1:1622234-1625457	CD4p_CD25-_Il17p_PMAstim_Th17
SE_20145	chr1:1622064-1625467	CD56
SE_21296	chr1:1622129-1625854	CD8_Memory_7pool
SE_22403	chr1:1622028-1625627	CD8_primiary
SE_27558	chr1:1622228-1625526	Esophagus
SE_31250	chr1:1622117-1625460	Fetal_Thymus
SE_32013	chr1:1622222-1625400	Gastric
SE_34455	chr1:1622114-1625688	HCT-116
SE_40508	chr1:1622183-1625443	K562
SE_41278	chr1:1622240-1625446	Left_Ventricle
SE_45385	chr1:1622112-1625464	NHLF
SE_50179	chr1:1622132-1625464	Sigmoid_Colon
SE_52422	chr1:1622200-1625473	Small_Intestine
SE_53355	chr1:1622223-1625568	Spleen
SE_57691	chr1:1622455-1625304	VACO_503
SE_65325	chr1:1621905-1625902	Pancreatic_islets
SE_69024	chr1:1622224-1625354	H9

Enhancer Sequence

AGCCATAGGA GCTGCTCGTC CCACCACAGG AATCTCAACG CCGGGTTACT GACAAAGCGT 60
CACTTTGCAC CTCGTCCAAC TGTGCAGACC TCTCCTAGCC AGGCCCCTGC ACCAGAGGTT 120
AAGAATCCGT GCCCCTGGTC AGGAAGTCCA GGTGGGTTCA AACGGCCAGC AGGGAATTTC 180
AGGCAAAATG TGTCCCAAAT CTTCAAACCA TGCCCCAGAA CTCAGACCTC CCCCTGGGAG 240
TTCGTCCCAA GGAAACCACC TGCAAGAGGC TCAGGCTGCA GGGGACACTC CGCTTCCAAA 300
ACCCGGAAGC TGGAGACCAC ACAAGTGCCC AACGCCAAAG GCACCCCGTG GAGGGACGCC 360
CTGTGCCCTC CCCCGACCAG GTGACCCGCT GCGCCCTACA CATCTTCACC AGGAAACATC 420
TGTTATCGAT GTGGACGAAG CGCAGCCTGC ACTCCCAGAT CCGCTCATTT TCGTTCTGCC 480
CTCCGTTTTA CGATTCGCCT ACACTGAAAA TGCGTGAGTG GAGTGGAAAG CCTTCCTACT 540
CCTGCCTCAG CGACCCCTTC TAAAATACTG CCTCGTTTGG CCTGAAAATG TGATTTGCAG 600
GCTTCCTGAG CAAAGTAGAT TTCACTCCAT TAAAGAAAAA AAAAAAGAAA AGGCACCGAA 660
CGGGGCTCGG CTGTCGGGAG TTTTGCTTTA GTTTTTTGCG TGTTTTGTTT TGTGTTTTTT 720
TGTTGTTGTT GTTCTTTTTG CGGCCACGCA CACCGCGTTC CCAGGCTTCA GGGCGTGGGG 780
GTCGCCGTGG ACTCCCGGAC GTGAAAACGC TTAAAGCCAG CTGGGAAAAC CCCACCAGCG 840
TTTTCCGCGC ACAGCGCCAG CCATAGGAAA GGACCCCCAG GAGCGAATCC GGGCAGGGAA 900
ACCCCGGACG CCCGCACACT CAGCATCAGT ACCGGCACCC AGCACCCAGC ACCGAGCACC 960
GAGCACGCAG CACCCAGCAC CGATCACCGA GCAGAGCACC CCGCACGCAG 1010