EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-02244

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:155158690-155159700

Target genes

Number: 34
Name	Ensembl ID

UBE2Q1	ENSG00000160714
ADAR	ENSG00000160710
KCNN3	ENSG00000143603
PMVK	ENSG00000163344
PBXIP1	ENSG00000163346
PYGO2	ENSG00000163348
SHC1	ENSG00000160691
CKS1B	ENSG00000173207
FLAD1	ENSG00000160688
LENEP	ENSG00000163352
ZBTB7B	ENSG00000160685
DCST2	ENSG00000163354
DCST1	ENSG00000163357
RP11	ENSG00000232093
ADAM15	ENSG00000143537
EFNA4	ENSG00000243364
EFNA3	ENSG00000143590
EFNA1	ENSG00000169242
SLC50A1	ENSG00000169241
DPM3	ENSG00000179085
TRIM46	ENSG00000163462
KRTCAP2	ENSG00000163463
MUC1	ENSG00000185499
MTX1	ENSG00000173171
THBS3	ENSG00000169231
GBAP1	ENSG00000160766
MTX1P1	ENSG00000236675
GBA	ENSG00000177628
FAM189B	ENSG00000160767
SCAMP3	ENSG00000116521
HCN3	ENSG00000143630
CLK2	ENSG00000176444
FDPS	ENSG00000160752
RUSC1	ENSG00000160753

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

NR2C2	MA0504.1	chr1:155159546-155159561	TGACCTCTGCCCCTC	-	6.52
RREB1	MA0073.1	chr1:155158955-155158975	TGTGTGTGTGTGTTTTGGGG	-	7.92

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

SE_23710	chr1:155156794-155161155	Colon_Crypt_1
SE_24238	chr1:155156895-155159019	Colon_Crypt_2
SE_24238	chr1:155159051-155160508	Colon_Crypt_2
SE_25271	chr1:155156201-155160380	Colon_Crypt_3

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I155183

chr1

155156295

155161054

Enhancer Sequence

TGGAAGGAAA AGAGATCCAG GGTGAGGAGC AAAAGGTACC TCCTAGAGCC CCTGGATGCC 60
ACCCCAGGCT GGGGTAATCA GTCCAGAGTC CTGGCCAGCT CTCAAAGGGT TAATTCAGAG 120
AGAGCACCTG CCACCCCACC AGCCAGGTGA CTGTAAACAG GGCTGCCCTC CTCCCTCTGC 180
TCTCCTTCAC TCCCTCTTCT TGGCTCTAAT CAGCCCCCTT GTCCCTCCAT TCTCTGCTGT 240
TCCAGCCTAA GGAGGTGTGT GTGTGTGTGT GTGTGTGTTT TGGGGGGCGG GGTGTATCTG 300
TGTCTTTGTA AAGCCGAGAG AGGGAGGTCT CCAGGAGGAG GAAAATAGGA GCAAGAAAAC 360
TAAACTCTCT CCTCCCCCAC CTGGAGTGGT TTTCCAGCCT CAGGTGGCTG CAGTAATTAT 420
TTACTAGGTC CCATAGAGAA AGACCAGGAG AGGAAGGAGG GAGCGTTCCT TGCTTCCTTG 480
AAGCTCCCAA GAACCCCACT GGCACCCACG CTCACCTGGT CTGCTGACAC TTCTTCTTCT 540
ACCTGGGAAA CCTCCCCCTA TGCCAGCCTT TCTCGGTCTA CCCTCCATTC CTAGGAGATG 600
ATTAGGGGCA CAGAGGCTCA CCCCTGGGAC TCCTCGGGAA GGGCTCCCCT GGGCATAGTG 660
CTCCACCCAT TTTGCCTCTG GGTGCAAAAA AGCAAAACAA AACAAAACTG CCACGGTGGC 720
ACCAGTTCAG CCAGCGCCAG CCAGCATGAA TGTGGACGGC CAATGATCTT TTAGGAATTC 780
TGGCAGTGGG GCCACTCCCT CTTGAGGGCC CCTTTCTTCC ATAGTCTCCT CCCAGGCCTG 840
TCCCCCAAAA CTCCTCTGAC CTCTGCCCCT CATCCTTGCC AGGCCCTCCC CTGCTCACTT 900
CACGCCACTT CTCACCTCTT CCAAGCTCTT TGGGTTTTCC AAGTACCCCC TTCAGAATCC 960
TTGCCCAGCC AAACCCTCTG CTTCCCCTGG CCTGTGGGGC CCAATCTCAC 1010