EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-01948

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:145439670-145439770

Target genes

Number: 27
Name	Ensembl ID

NBPF8	ENSG00000225241
PFN1P2	ENSG00000203843
WI2	ENSG00000215861
NBPF9	ENSG00000168614
RP4	ENSG00000254539
PDE4DIP	ENSG00000178104
SEC22B	ENSG00000223380
NUDT4P1	ENSG00000177144
NOTCH2NL	ENSG00000213240
RP11	ENSG00000255168
NBPF10	ENSG00000163386
U1	ENSG00000201558
HFE2	ENSG00000168509
TXNIP	ENSG00000117289
POLR3GL	ENSG00000121851
ANKRD34A	ENSG00000181039
LIX1L	ENSG00000152022
RBM8A	ENSG00000131795
GNRHR2	ENSG00000211451
PEX11B	ENSG00000131779
ITGA10	ENSG00000143127
ANKRD35	ENSG00000198483
PIAS3	ENSG00000131788
NUDT17	ENSG00000186364
POLR3C	ENSG00000186141
RNF115	ENSG00000121848
GPR89A	ENSG00000117262

dbSUPER

Number of super-enhancer constituents: 39
ID	Coordinate	Tissue/cell

SE_00750	chr1:145432380-145445459	Adipose_Nuclei
SE_02981	chr1:145438672-145440025	Bladder
SE_03588	chr1:145438515-145441915	Brain_Angular_Gyrus
SE_09909	chr1:145436516-145444994	CD14
SE_10440	chr1:145434363-145440939	CD19_Primary
SE_11279	chr1:145432543-145445172	CD20
SE_12082	chr1:145434374-145439908	CD3
SE_13107	chr1:145436615-145442190	CD34_Primary_RO01480
SE_13542	chr1:145436335-145443558	CD34_Primary_RO01536
SE_14604	chr1:145434311-145443818	CD4_Memory_Primary_7pool
SE_15429	chr1:145434740-145442446	CD4_Memory_Primary_8pool
SE_15878	chr1:145434852-145442745	CD4_Naive_Primary_7pool
SE_16566	chr1:145434576-145442092	CD4_Naive_Primary_8pool
SE_17274	chr1:145436461-145441956	CD4p_CD225int_CD127p_Tmem
SE_19090	chr1:145432427-145445199	CD4p_CD25-_Il17-_PMAstim_Th
SE_20184	chr1:145434367-145443669	CD56
SE_20813	chr1:145436413-145442781	CD8_Memory_7pool
SE_21574	chr1:145436238-145442974	CD8_Naive_7pool
SE_22030	chr1:145434398-145443024	CD8_Naive_8pool
SE_23523	chr1:145438443-145443309	Colon_Crypt_1
SE_24422	chr1:145439169-145439711	Colon_Crypt_2
SE_25816	chr1:145434377-145443383	Duodenum_Smooth_Muscle
SE_27997	chr1:145436404-145443601	Fetal_Intestine
SE_29253	chr1:145436384-145443411	Fetal_Intestine_Large
SE_29607	chr1:145436495-145441244	Fetal_Muscle
SE_31291	chr1:145434412-145443375	Fetal_Thymus
SE_31806	chr1:145434510-145441754	Gastric
SE_34844	chr1:145436792-145440680	HeLa
SE_40243	chr1:145436343-145441761	K562
SE_43130	chr1:145434374-145443479	Lung
SE_43539	chr1:145434126-145440963	MM1S
SE_50536	chr1:145434377-145445042	Sigmoid_Colon
SE_52426	chr1:145434415-145443573	Small_Intestine
SE_53908	chr1:145434364-145445153	Spleen
SE_55165	chr1:145436417-145442612	Thymus
SE_61887	chr1:145434365-145443053	Toledo
SE_62361	chr1:145432562-145443902	Tonsil
SE_67213	chr1:145434126-145440963	MM1S
SE_67763	chr1:145436687-145440586	u87

Enhancer Sequence

TATCAGCTAA ATGCATCTTT GAACTTTTCT GTCTAAAATA TCTTGCCCTC CTTTGATCAC 60
TTACTGTTCT TGGAGAGCGT TTTAAAATTT TCATTTTCTT 100