EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-00942

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:40724070-40724610

Target genes

Number: 12
Name	Ensembl ID

Y	ENSG00000202222
TRIT1	ENSG00000043514
RP1	ENSG00000236546
MYCL1	ENSG00000116990
MFSD2A	ENSG00000168389
RP3	ENSG00000228477
CAP1	ENSG00000131236
PPT1	ENSG00000131238
RP11	ENSG00000226745
ZMPSTE24	ENSG00000084073
COL9A2	ENSG00000049089
ZNF643	ENSG00000187801

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr1:40724518-40724530	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr1:40724522-40724534	AAACAAACAAAC	-	6.32
Zfx	MA0146.2	chr1:40724589-40724603	GAGGCCGAGGCGGG	-	6.01

Enhancer Sequence

GCCTAGACAG GGTCCAACCT GACCCCCATA CCCGGCCAGC CCTGGAGTAG CCTTGGCTTC 60
GACCCTGAGA CTCTTGATTG CTTCGGTCCC CGCGCCAGTC TCGTCTTTGT GGTCCCTGCT 120
GAGTCTCGTA ACTTGGCCCG ATGGCGGACT GTGGCTTTGA GGAGGGTCTT GGTGCGTCAA 180
GGAAGTTTTC TGTAACGTTA TCATGGGACC CAATCCCTTT AGGGCCTGGA GGAAGGCTTG 240
GGCTCTTGTG CCCTCCCTGC AGCTTCCTTG GGATCCTTGG GCCCAGACTT GGCCTCCTTT 300
ATCTTTGGAA TAAGCCTTTA AAAGGATTTA GACACCCAAC TTCCTCATGA CATTTATGTA 360
ATCATGCCTA ACCATAGGAT TTTGCAGTCC TTCCAAGAAC TTGCACTCTT GTTTCTCCTT 420
AAAGTGCATA TATTGTTTCT GCTTGAAAAA ACAAACAAAC AAACAAAAAA CTTATCGGGC 480
CCGGCGTGGT GTCTCATGCC TGTAATCCCA GCACTTTGGG AGGCCGAGGC GGGCGGATCA 540