EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-00708

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:28699650-28701200

Target genes

Number: 34
Name	Ensembl ID

STX12	ENSG00000117758
PPP1R8	ENSG00000117751
SCARNA1	ENSG00000252947
RPA2	ENSG00000117748
SMPDL3B	ENSG00000130768
XKR8	ENSG00000158156
RP11	ENSG00000238231
AL512288.1	ENSG00000240750
EYA3	ENSG00000158161
RP5	ENSG00000228589
PTAFR	ENSG00000169403
DNAJC8	ENSG00000126698
ATPIF1	ENSG00000130770
SESN2	ENSG00000130766
MED18	ENSG00000130772
PHACTR4	ENSG00000204138
RP1	ENSG00000229820
U6atac	ENSG00000221216
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNORA61	ENSG00000207311
SNORA44	ENSG00000207314
SNORA16A	ENSG00000207070
SNHG12	ENSG00000197989
RAB42	ENSG00000188060
TAF12	ENSG00000120656
RNU11	ENSG00000209804
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492
RP4	ENSG00000225616

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

FOSL1	MA0477.1	chr1:28700215-28700226	CATGAGTCACC	-	6.62
JUND	MA0491.1	chr1:28700215-28700226	CATGAGTCACC	-	6.02
NFAT5	MA0606.1	chr1:28700513-28700523	AATGGAAAAT	-	6.02
NFATC1	MA0624.1	chr1:28700513-28700523	AATGGAAAAT	-	6.02
NFATC3	MA0625.1	chr1:28700513-28700523	AATGGAAAAT	-	6.02
Nr2f6(var.2)	MA0728.1	chr1:28700019-28700034	TGAACTCCTGACCTC	-	6.22

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I028373

chr1

28700148

28701598

Enhancer Sequence

GTGGACACGA GGTCTCCCTG TGTTGCCCAG GATGGTCTTG AACTCCTGGA CTCAAGCAGT 60
CCTCCTACCT TAGCCTCCGA GAGTGCTGGG ATTATAGGCG TGAGCCAGTG TGTCTAGCTA 120
TATATTTATT CATTTATTTT GTTTGTTTTA AACATAATTT TTTTTTTTGA GATGGAGTTT 180
CACTCTTTTT GCCCAGGCTG AAGTGCAATG GCACGATCTT GGCTCACTGC AACCTCTGCC 240
TCCCGGGTTT AAGTGATTCT TCTGCCTCAG CCTCCTGAGT AGCTGGGATT ACAGGCATGT 300
GCCAACATGC CTGGCTAATT TTGTATTTTT AGTAGAGACG GGAATTCACC ATGTTGGCCA 360
GACTGGTCTT GAACTCCTGA CCTCAGATGA TCCGCCCACC TCAGCCTCCC AAAGTTCTGG 420
GATTACAGGC GTCAGCCATC ACGCCTGGCC CATAATTTTA TAATTTTTAT AGAGACAGGT 480
CTCGCCATGT TGCCCAGCCT GGTCTCAAAT TCCTTGGCTC AGGCGATCCT CTCACCTCAG 540
CCTCCCAAAG TGCTGGGATT ACAGGCATGA GTCACCATGC CCGGCCTCCC AGTACCATTT 600
TTTAAACAAA TTAATACACA TTGTGTCATT TAATCCTCAC TACAGTTCTG TGAGATGGTT 660
GTTACTCTCA TTTTACAGCT GATAAAGCCT AGCCTCTAAA ATGTTGAAGT GACTTGCCCA 720
AGGTTATAGT TAACCCAGGT AGGAAATATC AGAGTAAACC ATACTTCAAA TCTAGTCCTC 780
TTTCAGTTAC CTCACACTTA TTACAGCTAC TAATCTTAGC AGCACCAACA GCTTTAATTT 840
GCTAAAATCT AAATATTGGA GAAAATGGAA AATATTTTCC AATTAAGGCA AATTGATTTA 900
CAAGGAACTG GAATTTCTGG AACCATAAAC AATGAGTCTT TCTCTTAAAT TATATTGAAC 960
ATTGGTCCCA TTACTTTGTC TTCTCATATG CTGTGATTAC CTTGTGCCTA GGCAGAATGG 1020
CAGTTTTATG CAACGCTCAA AAAGTGGTGA GTTACTCAGT TTTGGTTCCC CCTAATCTTT 1080
GCTATAAGGT TTATTAAATA TGTTGGAGAA CATAAATACA ATAGCTTTGG CTGCTGAAAC 1140
TAACATTGAA GACAGAACCA AAATTAAGAT ACTGTACTTT TTTAGTCAGA CCATCGGGAC 1200
TCAAGAGAAT GCTCTCTCTA GTTTCTGCTT TTAATAAAAA CTTTTAATCA GTTTCAAACC 1260
TGCAGTTAAG TCTTGGATTT ATGTTAGTAC ATGCCATGAA TGTGACATCA GAAACAGAAA 1320
CCTATTTCAC CTCCCTTACT TATTAGGTAA AATGCATAAC ATGCCAATGG AATTGAGTCA 1380
ATACAATTAT GTAGTCTAGC CTTTCTAACT GGTAGTAGCC TGTTTGAAAT CTTTTATTAT 1440
TGCATTATAA TGGGAAAGAA CTTTTTTTCC TTGTGCTTTT GCTGTTGGTT TACTTCATTT 1500
CCAAAACCAT CTGTTCATTC AGTCAACAAA TACGGAAAGT CTGTTATATT 1550