EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-00689

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:27951660-27952550

Target genes

Number: 26
Name	Ensembl ID

ARID1A	ENSG00000117713
PIGV	ENSG00000060642
ZDHHC18	ENSG00000204160
RP1	ENSG00000226698
GPATCH3	ENSG00000198746
C1orf172	ENSG00000175707
RP11	ENSG00000172746
OSTCP2	ENSG00000225294
TRNP1	ENSG00000253368
FAM46B	ENSG00000158246
SLC9A1	ENSG00000090020
SNRPEP7	ENSG00000225990
WDTC1	ENSG00000142784
TMEM222	ENSG00000186501
U6	ENSG00000206888
SYTL1	ENSG00000142765
MAP3K6	ENSG00000142733
CD164L2	ENSG00000174950
GPR3	ENSG00000181773
WASF2	ENSG00000158195
AHDC1	ENSG00000126705
FGR	ENSG00000000938
IFI6	ENSG00000126709
PPP1R8	ENSG00000117751
SCARNA1	ENSG00000252947
RP5	ENSG00000228589

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr1:27952451-27952463	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr1:27952455-27952467	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr1:27952459-27952471	AAACAAACAAAC	-	6.32

dbSUPER

Number of super-enhancer constituents: 12
ID	Coordinate	Tissue/cell

SE_09188	chr1:27949083-27965280	CD14
SE_11718	chr1:27949316-27954182	CD20
SE_20210	chr1:27949159-27954255	CD56
SE_25377	chr1:27949159-27962785	DND41
SE_39434	chr1:27951231-27952277	Jurkat
SE_39434	chr1:27952438-27953464	Jurkat
SE_42462	chr1:27950990-27952305	Lung
SE_42462	chr1:27952351-27953571	Lung
SE_55520	chr1:27950655-27952111	Thymus
SE_62470	chr1:27916580-27996594	Tonsil
SE_66376	chr1:27951231-27952277	Jurkat
SE_66376	chr1:27952438-27953464	Jurkat

Enhancer Sequence

ACCTGAGGGT GAGACAGAAG GACAAGGAAG ATGAAGTCTC TGCCAATGTT TCTGTCAGCA 60
GCTGCCCAGC TCCTGCCCTC TTCAGGAAGC CAGAAGGCCT GGGCTCTGCC CCAGCATGAC 120
TTCTGCCTTC ACTTTCCTTC CTATCACCCC TGGCACACTT ACACAACCCC CGTCACATAG 180
GGCAAACCAC CCACACCAGC TCTCTTTCAC ACTCATACTC ACCTGACCCA CCAGCACAGT 240
CACACAATAA CACTCACAGC ATATATTTGC ATGAGTGTGC GTGCCAACCC CATCACACGC 300
CAATACAGGC TCTAACAAGC CCAAGCTCAC AATAGCACAC ACACATACAC ATGCACATAT 360
ACATGGGGTG CCTGCCAGGT TAACAGACGA ACACACTCAG ACACACATGA TTTTGAACAT 420
TATAATCATC TCTCTAACAG GATTTCTATC AAGCCATGCT CAGCTCCCTC ACAGTCCCCA 480
GTCACCATCT CCTAAAAACC AGTTCTTCCG GCCAGGCGCA GTGGCTCACG CCTATAATCC 540
CAGCACTTTG GGAGACCGAG GTGAGTGGAT CACAAGGTCA GGAGTTCGAG ACCAGCCTGG 600
CCAATATGGT GAAACCCCGT CTCTACTAAA AATACAAAAA TTAGCCAGAC GTGGAGGTGG 660
GCGCCTGTAG TCCCAGCTAC TTGGGAGGCC GAGGCAGCAG AATCACTTGA ACCTGGGAGG 720
TGGAGCTTGC AGTGAGCCGA GATCGCACCA CTGCACTCCA GCCCGGGTGA CAGAGCAAGA 780
CTCCATCTCA AAAACAAACA AACAAACAAA CAAAAAACAG TCCTTCCTCT GAACCCTGCT 840
GTGCTCCCAG CCACCCTAGG GTTCCATGTG GTGGCTGAGT GAGAGTGGAT 890