EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS121-02859

Organism

Homo sapiens

Tissue/cell

LNCaP

Coordinate

chr1:154986570-154987130

Target genes

Number: 31
Name	Ensembl ID

PMVK	ENSG00000163344
PBXIP1	ENSG00000163346
PYGO2	ENSG00000163348
SHC1	ENSG00000160691
LENEP	ENSG00000163352
ZBTB7B	ENSG00000160685
DCST2	ENSG00000163354
DCST1	ENSG00000163357
RP11	ENSG00000232093
ADAM15	ENSG00000143537
EFNA4	ENSG00000243364
EFNA3	ENSG00000143590
SLC50A1	ENSG00000169241
DPM3	ENSG00000179085
HMGN2P18	ENSG00000223452
TRIM46	ENSG00000163462
KRTCAP2	ENSG00000163463
MTX1	ENSG00000173171
THBS3	ENSG00000169231
GBAP1	ENSG00000160766
MTX1P1	ENSG00000236675
GBA	ENSG00000177628
FAM189B	ENSG00000160767
SCAMP3	ENSG00000116521
HCN3	ENSG00000143630
CLK2	ENSG00000176444
FDPS	ENSG00000160752
RUSC1	ENSG00000160753
MIR555	ENSG00000207720
ASH1L	ENSG00000227773
POU5F1P4	ENSG00000237872

dbSUPER

Number of super-enhancer constituents: 26
ID	Coordinate	Tissue/cell

SE_00535	chr1:154968005-154987480	Adipose_Nuclei
SE_01029	chr1:154971412-154987437	Adrenal_Gland
SE_05420	chr1:154975117-154986988	Brain_Cingulate_Gyrus
SE_06112	chr1:154975116-154991667	Brain_Hippocampus_Middle
SE_12314	chr1:154986225-154987098	CD3
SE_14762	chr1:154971157-154987264	CD4_Memory_Primary_7pool
SE_17044	chr1:154979797-154987116	CD4p_CD225int_CD127p_Tmem
SE_17548	chr1:154971096-154992943	CD4p_CD25-_CD45RAp_Naive
SE_17979	chr1:154971185-154991480	CD4p_CD25-_CD45ROp_Memory
SE_18930	chr1:154975194-154992517	CD4p_CD25-_Il17-_PMAstim_Th
SE_19307	chr1:154971380-154987240	CD4p_CD25-_Il17p_PMAstim_Th17
SE_23265	chr1:154975084-154987002	Colon_Crypt_1
SE_23923	chr1:154986485-154986923	Colon_Crypt_2
SE_24954	chr1:154985450-154986785	Colon_Crypt_3
SE_26626	chr1:154971404-154992820	Esophagus
SE_31489	chr1:154971403-154990904	Gastric
SE_40187	chr1:154986300-154987016	K562
SE_41600	chr1:154972085-154986790	LNCaP
SE_42490	chr1:154975153-154987405	Lung
SE_50133	chr1:154971335-154992744	Sigmoid_Colon
SE_52379	chr1:154971308-154992003	Small_Intestine
SE_53597	chr1:154971362-154987092	Spleen
SE_59127	chr1:154971104-154991422	Ly3
SE_60203	chr1:154969567-154991253	Ly4
SE_61653	chr1:154971190-154991278	Toledo
SE_62469	chr1:154971183-154991923	Tonsil

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I155010

chr1

154982643

154986930

Enhancer Sequence

TGAGTCTGAA CTCTCTCATT GGCCTCTCCC CAGGTTATGA GGAGGTTCAT TACAAAGACT 60
GTTACCTCAC TTTTCAAATG ACTGAGGCCA GCTGCCAGTA CCACCCCCGG TCCTTCAGCC 120
AATTCTTTAT GAAGCCTGAA CCGGGACCCA GGCATCCTAT CTCCCAGTCC ACTGCTCCTT 180
CCAAAGAGAT GGGGAATGGG GCAGGTGACA TAGATGGACC TCCATGAAAG GGCCAGAAAG 240
GCAGGGCTCC TGCTGCCACA GAGGCAGAGT AGAATAGTAT AGTGGTTAGG AACAAGGACC 300
GGGCCCACTC CCTGAGTTTG AACACTGTTC TGCACTTAAC TTGGAAAATC ACTTCACCTG 360
TCTGAACCTC AGTTTCCTTG TCTGTGAAAC AGATGATGAT CATACTTCAG AGGGTTCTGG 420
AAGATGAAAT GAGTGTAAAG TACTCAGAAG GGTGACTGGC ATGCAGTCAT CCCTCAATAA 480
GTATTGGCTA AAGTTGGTCC TCTTTCCCCA GACCCCTGTG GGCTGAGCGC TCTTAATCTC 540
CCCTCTACTT GACTCTGCAG 560