EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS121-01280

Organism

Homo sapiens

Tissue/cell

LNCaP

Coordinate

chr1:37948140-37948330

Target genes

Number: 8
Name	Ensembl ID

RP11	ENSG00000233621
ZC3H12A	ENSG00000163874
MEAF6	ENSG00000163875
FTH1P1	ENSG00000232273
SNIP1	ENSG00000163877
RP3	ENSG00000237749
GNL2	ENSG00000134697
C1orf109	ENSG00000116922

dbSUPER

Number of super-enhancer constituents: 16
ID	Coordinate	Tissue/cell

SE_00995	chr1:37938982-37953203	Adrenal_Gland
SE_01903	chr1:37948265-37953245	Aorta
SE_11493	chr1:37938939-37953541	CD20
SE_17494	chr1:37937374-37948402	CD4p_CD25-_CD45RAp_Naive
SE_17864	chr1:37936810-37948825	CD4p_CD25-_CD45ROp_Memory
SE_18659	chr1:37937079-37948798	CD4p_CD25-_Il17-_PMAstim_Th
SE_19263	chr1:37938768-37948200	CD4p_CD25-_Il17p_PMAstim_Th17
SE_22516	chr1:37940241-37948736	CD8_primiary
SE_31547	chr1:37938860-37953351	Gastric
SE_34808	chr1:37936154-37948891	HeLa
SE_41638	chr1:37947973-37951816	LNCaP
SE_42562	chr1:37938719-37953498	Lung
SE_50165	chr1:37938796-37948704	Sigmoid_Colon
SE_54020	chr1:37947718-37948497	Spleen
SE_62625	chr1:37936685-37953308	Tonsil
SE_65323	chr1:37939205-37953672	Pancreatic_islets

Enhancer Sequence

GGTATGGAAC CCAGCCTGCC CTCCCCGGCC CTCCTCACTC CTGCCCTTCC TCTCACCTGT 60
CTGCCTGTGC CCTGTTTTCC TCTTGGGGAC CTCCACCATT GGACCACCCA ACCCCGTTTC 120
CTGTGCCACC CCTTCCCTGC TCTCATCCCT GGTTCTGAAG TGCCCCTGCT TAGAGTCCCT 180
CTTGATTCCT 190