Tag | Content |
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EnhancerAtlas ID | HS121-00929 |
Organism | Homo sapiens |
Tissue/cell | LNCaP |
Coordinate | chr1:25890280-25891660 |
TF binding sites/motifs | TF | JASPAR ID | Coordinate | Motif Sequence | Strand | -Log10(p-value) |
Gata4 | MA0482.1 | chr1:25891635-25891646 | TCTTATCTCCT | + | 6.14 | RARA(var.2) | MA0730.1 | chr1:25890322-25890339 | TGACCTCTGGGTGAGCC | - | 6.08 | SOX10 | MA0442.2 | chr1:25891645-25891656 | TGCTTTGTTTT | - | 6.02 | ZNF263 | MA0528.1 | chr1:25891261-25891282 | CTCCCTTCCCCACCCTCTTCC | - | 6.19 | ZNF263 | MA0528.1 | chr1:25891264-25891285 | CCTTCCCCACCCTCTTCCTTT | - | 6.33 |
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| Number of super-enhancer constituents: 16 | ID | Coordinate | Tissue/cell |
SE_02010 | chr1:25890927-25896559 | Aorta | SE_03472 | chr1:25886787-25890526 | Brain_Angular_Gyrus | SE_03472 | chr1:25890604-25897057 | Brain_Angular_Gyrus | SE_04384 | chr1:25883710-25897130 | Brain_Anterior_Caudate | SE_05146 | chr1:25875255-25899602 | Brain_Cingulate_Gyrus | SE_05991 | chr1:25873945-25899913 | Brain_Hippocampus_Middle | SE_06990 | chr1:25882590-25898188 | Brain_Hippocampus_Middle_150 | SE_08141 | chr1:25882606-25897422 | Brain_Inferior_Temporal_Lobe | SE_15269 | chr1:25881504-25892507 | CD4_Memory_Primary_7pool | SE_16249 | chr1:25886217-25892811 | CD4_Naive_Primary_7pool | SE_17633 | chr1:25869448-25897028 | CD4p_CD25-_CD45RAp_Naive | SE_19031 | chr1:25874010-25893424 | CD4p_CD25-_Il17-_PMAstim_Th | SE_24457 | chr1:25890007-25890719 | Colon_Crypt_2 | SE_53664 | chr1:25874991-25896829 | Spleen | SE_55600 | chr1:25891316-25892611 | Thymus | SE_65397 | chr1:25887914-25896024 | Pancreatic_islets |
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| Number: 4 | ID | Chromosome | Start | End |
GH01I025563 | chr1 | 25890441 | 25890490 | GH01I025564 | chr1 | 25890883 | 25890910 | GH01I025565 | chr1 | 25891281 | 25897035 | GH01I025559 | chr1 | 25886294 | 25890330 |
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Enhancer Sequence | GGGTGAGTGG TTGTGTGGCC AGCAGATCGG TGATCCTCAG CCTGACCTCT GGGTGAGCCT 60 GGGGCTGCTC CAGGGACCAG GCCCTGGGAC CCGTGACTTG TGGGCCTCTG GGAGGACCAG 120 ACCCAGCCCG GTAGTGCCCA GGCGCAGGAT AGGGGATGAA CAATGTCCCT TTTGAACCTG 180 AGGCTGCATC CCCAACAGGC TTGGCTCCCA GCACAGCTGT CTCCTCACAA TGCTTGGCCT 240 CTTGGCCTGA GCGTCCACGG CTCTGCCCAC CACAAGACCA GCCAAAGGCG CCCTTGTTCT 300 TGGTGTGGCA GAGCTCGCTC CTACCACCCC TCCCCCTCAG CCGCCTGAAT GAGGACCCAG 360 AGACTTGGGC AGTCACCAGC TTGGTCCCTG ACTCCCTCAG GGACTCAGGG CAAGCCCCCT 420 GACCTCTCTG TCTCAGCTTT TTCATCTCAG TAAGGGTGAT GACCTCTGCC AACGGAATCT 480 CCCCGAGGAA CCTGAAATTT AATTTTAATT TTTCATTTGG AAATAATTTC AGACTGTGTT 540 ACAAAATTAG TACAGAGAAT TCCTGTTCAC CCGTCATCCA GATTCCCCAA TTGTTAACAT 600 CTTGCATGAC CACATTACAC TGGTCAGAAT CAGGAAACAA ACACGATACT GTGCTGTTAT 660 ATAATCTATA GAACTTACAC ATTTCTCCAG GTGCCCCTTC AGTGTCCTGT TTCTGGCCCA 720 GGATCCATTG CAGAATCACA TGTTAACTTG TCGTCTCTTT AATTTTTAAA AATCTGGGTA 780 CTGGGGGCTC CCCTGGTGTC CCTCGAGCCT GTTCTCTGCT GTTTGGGAAC CACCCTTGCC 840 ACTTGCCCAT CCTCACCAGA AGGCCATGGA GGGACCTCAC CTGTCGCTTT TCTGCTGAGG 900 CTGTGGGACT CCTGGCATCA GTTATCCCTC ATGAACTTGG AATTTTGGCT TGGCTTTTGG 960 AAGTAAATGA AGGCAAGAAA ACTCCCTTCC CCACCCTCTT CCTTTTGGAA TTTGAAAGCC 1020 ATAGAAGTCA TCAGGTCCAA TGCCCTCCTC TTATTGAAGG AAAAGCTGAG TTTCAACGTG 1080 GAGCAGTGAC TTGCCCAAGG TCTCACGGGC AGGTAGCATG GACCAGGGCA CTGAACCCAC 1140 CTGGGTCTCC AGACACCCTG GGACATGGCC TTTCTCCTCT CCCACGTCTC CAGCTTTGGG 1200 TCCTTGGGCT GAGATGCTGG CGATGCACCC AGGCAGGAGG CCTGCCTGAG GCCGTGCCTC 1260 CAGGCGCCCA CCCTGAGCTT GTGTCCTGAG TCCCTGTAGC TTACCCAGGG CTGGGACAAG 1320 CCCCAGCTGT GAGCATGGGC TCCCCCAAAC ATAGTTCTTA TCTCCTGCTT TGTTTTCCCC 1380
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