EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS117-00612

Organism

Homo sapiens

Tissue/cell

LHCN-M2

Coordinate

chr1:201531230-201532210

Target genes

Number: 13
Name	Ensembl ID

TMEM9	ENSG00000116857
TNNT2	ENSG00000118194
LAD1	ENSG00000159166
TNNI1	ENSG00000159173
RP11	ENSG00000224818
PHLDA3	ENSG00000174307
CSRP1	ENSG00000159176
RPS10P7	ENSG00000223396
IPO9	ENSG00000198700
SHISA4	ENSG00000198892
LMOD1	ENSG00000163431
TIMM17A	ENSG00000134375
RNPEP	ENSG00000176393

dbSUPER

Number of super-enhancer constituents: 16
ID	Coordinate	Tissue/cell

SE_02662	chr1:201530490-201533031	Astrocytes
SE_03518	chr1:201531365-201532292	Brain_Angular_Gyrus
SE_05175	chr1:201531173-201533364	Brain_Cingulate_Gyrus
SE_06157	chr1:201531124-201543283	Brain_Hippocampus_Middle
SE_07280	chr1:201531373-201532479	Brain_Hippocampus_Middle_150
SE_08097	chr1:201531243-201532862	Brain_Inferior_Temporal_Lobe
SE_37083	chr1:201528174-201537720	HSMMtube
SE_44518	chr1:201527933-201533209	NHDF-Ad
SE_45347	chr1:201529934-201533172	NHLF
SE_45633	chr1:201527920-201535652	Osteoblasts
SE_52112	chr1:201528377-201533160	Skeletal_Muscle_Myoblast
SE_56031	chr1:201528553-201532965	u87
SE_63919	chr1:201528508-201533164	HSMM
SE_65852	chr1:201531402-201532104	Pancreatic_islets
SE_67744	chr1:201528553-201532965	u87
SE_67991	chr1:201468991-201535915	TC32

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I201559

chr1

201528377

201533452

Enhancer Sequence

CAGGCGGTTC TCCCACCTTA GCCTCCTAAG TAGCTGAGAC TACAGGCACA CACCACCTTG 60
CCTGGCTAAT TTTTTTTTTT TTTTTTGTAG AGACAGCTGG GTTGGGAAGT CTCACTATGT 120
TGCCTAGGCT GGTCTCGAAC TCCTGGGCTC AAGTGATCCT CTGGCCTTTC AGCCCCAAAA 180
GTGCTGGAAT TACAGGCATG AGCCACCAAA CCCAACCTGA AGGTATTTTT CTAAGGTCAA 240
GTATGCCCCC CGACCTTGGG TCCTAGTTGG TAGAAAGCAT TTCCGAAGTG GAGACATCTG 300
GATGGCAGAT GTGAAGTTGG CTGGGATGGG CGAAGGTCTG GAAGGCTTCA GATTCCAGGC 360
CCCATGACTC ACTCCTCCAT CACAGCAACC CCTCAGCAGC TGGGCCTCCT GAGCCCTGGG 420
CAGGACAGGG TTAGTGGGCC AGGCCCAGGT GGGCAGTGGT CCTTTGCCTT GGACACTGTA 480
TGGTCTGAAA GGATCCCGGC AGGACTGATC ACTTTTGAAA CTGCTTTCTG AAAGCTCCAA 540
GCTTCCTTCT GAGTGGAGCT TAAGATATAA TATTAAGCAG GTCATTCTAG GACTGTATGA 600
GAGCAGAATG TGGCATCTCT TTCTGTTTTA GCTTGCAGGG TACTTCTAGG CGGTTGGTGC 660
TCTCTCCTGG GCCTGGTGGA TGGAAGGGAG CAGGCAGGGA GGGGTGGGGC AGGCCCTGCC 720
TACAGAGCCT GTCAGTAGGG AACCAGTGAG TCACCAGAAG TCCAATACCT CAGTCCAGAT 780
CCTGGATGCT GTTGGATCAC GGGATCTGTC TGAGCATCAG TTTCCTTTTC TGAAAAGTAG 840
GGATGATAAC AGCCTAGGAC GGTGGGTGAA TCAGTGAGGT AATGCACAGG AACACGCATA 900
GTAAATAGTT TTTGCCAGAG TGGGTGGTTA TGAGTATTTA GAGTGGCCTG AGCCTCCCAA 960
TTGAAATATC CTGGCCTTTT 980