EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS101-01344

Organism

Homo sapiens

Tissue/cell

HT29

Coordinate

chr1:43496800-43497990

Target genes

Number: 28
Name	Ensembl ID

PPCS	ENSG00000127125
CCDC30	ENSG00000186409
TMSB4XP1	ENSG00000236876
PPIH	ENSG00000171960
RP5	ENSG00000234917
YBX1	ENSG00000065978
CLDN19	ENSG00000164007
LEPRE1	ENSG00000117385
C1orf50	ENSG00000164008
ERMAP	ENSG00000164010
CCDC23	ENSG00000177868
RP11	ENSG00000228192
ZNF691	ENSG00000164011
ATP6V1E1P1	ENSG00000225099
SLC2A1	ENSG00000117394
EBNA1BP2	ENSG00000117395
TMEM125	ENSG00000179178
C1orf210	ENSG00000253313
CDC20	ENSG00000117399
ELOVL1	ENSG00000066322
MED8	ENSG00000159479
SZT2	ENSG00000198198
HYI	ENSG00000178922
PTPRF	ENSG00000142949
KDM4A	ENSG00000066135
SHMT1P1	ENSG00000224751
IPO13	ENSG00000117408
CCDC24	ENSG00000159214

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Nr2f6(var.2)	MA0728.1	chr1:43497902-43497917	TGAACTTCTGACCTC	-	6.38
RARA	MA0729.1	chr1:43497899-43497917	TCTTGAACTTCTGACCTC	-	6.88
Zfx	MA0146.2	chr1:43496896-43496910	CCCGCCTCGGCCTC	+	6.01
Zfx	MA0146.2	chr1:43497927-43497941	CCCGCCTCGGCCTC	+	6.01

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I043031

chr1

43496989

43497679

Enhancer Sequence

CCACCACCAC GCCTGGCTAA TTTTTTGTAT TTTGAGTAGA GACGGGGTTT CACCATGTTA 60
GCCAGGATGG TCTCGATCTC CTAACCTTGT GATCCGCCCG CCTCGGCCTC TCAAAGTGCT 120
GGGATTACAG GCGTGAGCCA CCGCGCCCAG CAAAATTGGG AAATTTCAAC ACAGAAGTAG 180
TACGTGACTT GTCAAAGGTC ACACAGCTAG TGAGTTAAGT GGTGGGGCCT GATTAACATC 240
CAGGCAGACA AGGATTCCAA GTCTGTGGGC TTAACCCCTA CACTCTACTG TTTCTCAATG 300
CTCAAATGAA CATACCAGCA GCTAAATCTC TGTACATATT TTTAGTTGTT TCTTTGCTAT 360
AAGTGCCTAG ATGTGAAATG ACTGGACCAA TGGGTATGCA TATTTTACAG TTTTTAATGC 420
AAGCTGTTCC AAACTGTGTT GCTGGGTTTT GAATGTGTCA ATTCTGACTG TCTCCTACCT 480
TCGTTGGTCA TAGCTTCCTG GTCTAGCAAT CTAGGAATGC GGCAAAATTC TCCAAGCACT 540
CTGAGGGTGT GTCCTCCTGC ACCCGGGGCC TGTCTGTTTT CTCCTTGGGG AAGTCTTCAT 600
GGTCTCCATG TCAGCAGCTC CCTCCTTTAA TGCTCATGTC CCCTGCTATG GCCCTGACTG 660
TGCTGGACTG CAGCAGTATG TGTTGAGCTC TGTGAGTTCC TGGAGGTGGG GCCTTTGACT 720
GAGGCCATTT GTGTACTCAT TGCCTAGTGT GGGACTTGGT GTGCCTGGCA GCAGTGTCTG 780
ATCACCTCTG TTAAGTATAC GAATGAGTGG AGTGCACATG TGGGGACAAT TGGTACAGAG 840
CATCTGACAT TGGAATGGTT CTCAGCATTC CAGGCCACTG TTTTTTTTTT TTTTTTTTTT 900
TGGAATAAAG TTTCGCTCTT GTTGCCCAGG CTGGAGCGCA ATGGCGCGAT CTCGGCTCAC 960
GGCAACCTCT GCCTCCCGGG TTCAAGTGAT TCTCCTGCCT CAGCCTCCTG AGTAGCTGGG 1020
ATTACAGGCG CCGCCACCAT GCCCGGCTAA TTTTTGCATA TTTAGTAGAG ACAGGGTTTC 1080
ACCATGTTGA CCAGGCTGGT CTTGAACTTC TGACCTCAGG TGATCCACCC GCCTCGGCCT 1140
CCCAAAGTGC TGGGATTACA GGCGTGAGCC ACCATGCCCA GCCACTAGGC 1190