EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS101-01047

Organism

Homo sapiens

Tissue/cell

HT29

Coordinate

chr1:32154680-32155340

Target genes

Number: 18
Name	Ensembl ID

SNRNP40	ENSG00000060688
ZCCHC17	ENSG00000121766
RP11	ENSG00000229044
SERINC2	ENSG00000168528
TINAGL1	ENSG00000142910
HCRTR1	ENSG00000121764
PEF1	ENSG00000162517
COL16A1	ENSG00000084636
BAI2	ENSG00000121753
AL136115.1	ENSG00000212673
RP4	ENSG00000228634
PTP4A2	ENSG00000184007
KHDRBS1	ENSG00000121774
KPNA6	ENSG00000025800
TXLNA	ENSG00000084652
EIF3I	ENSG00000084623
HDAC1	ENSG00000116478
MARCKSL1	ENSG00000175130

TF binding sites/motifs

Number: 7

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Nr5a2	MA0505.1	chr1:32154809-32154824	GGGTCCAAGGCCAGC	+	6.24
RFX1	MA0509.2	chr1:32155127-32155143	GGTTGCCATGGAGACC	+	6.14
RFX1	MA0509.2	chr1:32155127-32155143	GGTTGCCATGGAGACC	-	6.16
RFX2	MA0600.2	chr1:32155127-32155143	GGTTGCCATGGAGACC	-	6.43
RFX2	MA0600.2	chr1:32155127-32155143	GGTTGCCATGGAGACC	+	6.61
RFX5	MA0510.2	chr1:32155127-32155143	GGTTGCCATGGAGACC	-	6.15
RFX5	MA0510.2	chr1:32155127-32155143	GGTTGCCATGGAGACC	+	6.26

dbSUPER

Number of super-enhancer constituents: 6
ID	Coordinate	Tissue/cell

SE_37841	chr1:32154584-32156642	HSMMtube
SE_45258	chr1:32154043-32156517	NHLF
SE_46488	chr1:32154614-32156704	Osteoblasts
SE_46800	chr1:32154019-32154982	Ovary
SE_46800	chr1:32155141-32155565	Ovary
SE_56472	chr1:32154314-32156962	u87

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I031687

chr1

32153019

32158386

Enhancer Sequence

GTCTCCCTGC AGGGTAAAAA GGTTTGTGGG CTGAGGCAGG GCACGATGGG GCACCCCCAA 60
ACTCCCTGGC AATATGCGAG GACAGCAATG TCACACACGC AAACCGTCCA AACACCTAGG 120
GGTCCCATGG GGTCCAAGGC CAGCACCCCA GAGGCAGGGT TCATCAACCC ACATAACAAG 180
CAGGAGCGTG GCGGGGGGAA TGACGCCAGG TTAAGCTAAC CCAGTGGGAA GTTCCTGCAT 240
ATACCCAATC ACCTTTTTGT CTGACAGCTC CCAGGTGCTC CTGAAAGAGG GGGTCTGTGA 300
GAGAGGGGGC TAACCCAGTC CTGCTCACTC CTTTCCTCCA CCCCCAAAAC ATACCCAATC 360
CTAGGACACA GCCTCACTCA CAGTAAGGGT GGGCTCCAGC CCAGCTTGCC CAAAAGGCAC 420
CCTAGAGTCT CCTGGAAAGC CCTGGGAGGT TGCCATGGAG ACCGGAGGTG GCACTCTAGC 480
CCAGCCCTGA GTTCTATGGT TCAGACCCCT TACCACAGTA AGAGCCTAGA CTCTCTGCCC 540
ATAATCTCTC TGTAGCCACG AGAAGTACCC AGCCCCTCTG CCCAATTCCT CTCTATGATC 600
ATGTCCCCAG GTTTCTTTGT GTGTTGGGGG AGGTCCCTCA ATGGTCACCC TGGGCACTCA 660