EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS101-00861

Organism

Homo sapiens

Tissue/cell

HT29

Coordinate

chr1:27099120-27099300

Target genes

Number: 28
Name	Ensembl ID

RP11	ENSG00000236782
SH3BGRL3	ENSG00000142669
UBXN11	ENSG00000158062
DHDDS	ENSG00000117682
RP3	ENSG00000223583
HMGN2	ENSG00000198830
RP5	ENSG00000260063
ARID1A	ENSG00000117713
PIGV	ENSG00000060642
ZDHHC18	ENSG00000204160
SFN	ENSG00000175793
RP1	ENSG00000226698
GPN2	ENSG00000142751
NUDC	ENSG00000090273
GPATCH3	ENSG00000198746
NR0B2	ENSG00000131910
C1orf172	ENSG00000175707
TRNP1	ENSG00000253368
FAM46B	ENSG00000158246
SLC9A1	ENSG00000090020
WDTC1	ENSG00000142784
TMEM222	ENSG00000186501
SYTL1	ENSG00000142765
MAP3K6	ENSG00000142733
GPR3	ENSG00000181773
WASF2	ENSG00000158195
AHDC1	ENSG00000126705
FAM76A	ENSG00000009780

dbSUPER

Number of super-enhancer constituents: 29
ID	Coordinate	Tissue/cell

SE_00374	chr1:27097251-27099898	Adipose_Nuclei
SE_02221	chr1:27097279-27101225	Aorta
SE_02498	chr1:27097278-27100621	Astrocytes
SE_04138	chr1:27097430-27099267	Brain_Anterior_Caudate
SE_06169	chr1:27097264-27099358	Brain_Hippocampus_Middle
SE_08106	chr1:27097454-27099315	Brain_Inferior_Temporal_Lobe
SE_09344	chr1:27097106-27099992	CD14
SE_11056	chr1:27097334-27099536	CD20
SE_13729	chr1:27097474-27099289	CD34_Primary_RO01536
SE_14400	chr1:27097065-27099875	CD4_Memory_Primary_7pool
SE_18323	chr1:27097213-27100117	CD4p_CD25-_Il17-_PMAstim_Th
SE_20972	chr1:27097109-27099868	CD8_Memory_7pool
SE_26401	chr1:27097358-27100236	Duodenum_Smooth_Muscle
SE_27476	chr1:27097468-27100093	Esophagus
SE_31868	chr1:27097381-27099389	Gastric
SE_37430	chr1:27092613-27100837	HSMMtube
SE_39185	chr1:27097371-27100658	IMR90
SE_39987	chr1:27097386-27100170	K562
SE_40913	chr1:27097213-27101262	Left_Ventricle
SE_42523	chr1:27097329-27100645	Lung
SE_44647	chr1:27097245-27100869	NHDF-Ad
SE_44927	chr1:27097156-27100628	NHLF
SE_46170	chr1:27097067-27101074	Osteoblasts
SE_48920	chr1:27097471-27099643	Right_Atrium
SE_50689	chr1:27097504-27099349	Sigmoid_Colon
SE_52190	chr1:27097424-27100479	Skeletal_Muscle_Myoblast
SE_53212	chr1:27097497-27100158	Small_Intestine
SE_53683	chr1:27097339-27099260	Spleen
SE_63975	chr1:27097356-27100479	HSMM

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I026770

chr1

27097237

27101688

Enhancer Sequence

GAGGTAAGGC CAAGAGCAGG GGCAGATGGT TGGGAGGATG GCTGAAGATA AGTGCATGGG 60
AACTCCTTGC AGCCCAAGGT GGTCCTTGCC TCTGCCTTCC CAGCCAGTGA CTCCTGCGTG 120
TCCTTTGTTA TATTGGAGGA ATTGGTTTAT TTGTGGTTTA CTTGGTTTTC CTCACTCTGG 180