EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS101-00411

Organism

Homo sapiens

Tissue/cell

HT29

Coordinate

chr1:16158930-16160700

TF binding sites/motifs

Number: 1

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Gfi1b

MA0483.1

chr1:16160160-16160171

AGCTGTGATTT

6.14

dbSUPER

Number of super-enhancer constituents: 59
ID	Coordinate	Tissue/cell

SE_00733	chr1:16157088-16163690	Adipose_Nuclei
SE_01034	chr1:16159546-16160187	Adrenal_Gland
SE_02585	chr1:16160164-16163086	Astrocytes
SE_03086	chr1:16159578-16160008	Bladder
SE_04662	chr1:16159218-16164364	Brain_Anterior_Caudate
SE_07045	chr1:16159045-16164529	Brain_Hippocampus_Middle_150
SE_09659	chr1:16159157-16165128	CD14
SE_10503	chr1:16159866-16164586	CD19_Primary
SE_11576	chr1:16159398-16165553	CD20
SE_12320	chr1:16159385-16163360	CD3
SE_13003	chr1:16159767-16162820	CD34_Primary_RO01480
SE_13503	chr1:16157416-16164524	CD34_Primary_RO01536
SE_14559	chr1:16157372-16164348	CD4_Memory_Primary_7pool
SE_15620	chr1:16159379-16164147	CD4_Memory_Primary_8pool
SE_17128	chr1:16159547-16163328	CD4p_CD225int_CD127p_Tmem
SE_17664	chr1:16159021-16164561	CD4p_CD25-_CD45RAp_Naive
SE_18153	chr1:16159042-16164512	CD4p_CD25-_CD45ROp_Memory
SE_19632	chr1:16159221-16164377	CD4p_CD25-_Il17p_PMAstim_Th17
SE_20208	chr1:16159442-16164740	CD56
SE_20894	chr1:16157479-16164379	CD8_Memory_7pool
SE_21881	chr1:16159915-16163455	CD8_Naive_7pool
SE_22742	chr1:16159269-16164462	CD8_primiary
SE_23545	chr1:16159566-16160333	Colon_Crypt_1
SE_23545	chr1:16160426-16164186	Colon_Crypt_1
SE_24061	chr1:16159609-16160048	Colon_Crypt_2
SE_24990	chr1:16160144-16164228	Colon_Crypt_3
SE_26368	chr1:16159768-16163474	Duodenum_Smooth_Muscle
SE_26781	chr1:16158347-16164299	Esophagus
SE_27856	chr1:16159874-16164754	Fetal_Intestine
SE_28793	chr1:16159852-16164776	Fetal_Intestine_Large
SE_29631	chr1:16159689-16164242	Fetal_Muscle
SE_31140	chr1:16159915-16164113	Fetal_Thymus
SE_31626	chr1:16159228-16160321	Gastric
SE_34600	chr1:16159300-16160344	HCT-116
SE_35125	chr1:16159010-16163340	HeLa
SE_35392	chr1:16159815-16163310	HepG2
SE_36349	chr1:16156416-16163347	HMEC
SE_38809	chr1:16159750-16163338	HUVEC
SE_39995	chr1:16157863-16163371	K562
SE_41004	chr1:16159369-16160256	Left_Ventricle
SE_41004	chr1:16160285-16164333	Left_Ventricle
SE_42409	chr1:16159424-16160472	Lung
SE_42409	chr1:16160485-16164415	Lung
SE_48268	chr1:16158721-16163899	Psoas_Muscle
SE_50323	chr1:16159399-16160440	Sigmoid_Colon
SE_51394	chr1:16157970-16164477	Skeletal_Muscle
SE_52599	chr1:16159385-16160287	Small_Intestine
SE_53349	chr1:16159390-16160426	Spleen
SE_53349	chr1:16160507-16164502	Spleen
SE_55286	chr1:16159622-16160336	Thymus
SE_55286	chr1:16160406-16164272	Thymus
SE_57557	chr1:16159649-16160019	VACO_503
SE_60701	chr1:16157158-16178526	DHL6
SE_62015	chr1:16156216-16178176	Toledo
SE_62475	chr1:16156358-16178756	Tonsil
SE_63255	chr1:16159787-16176939	GLC16
SE_64539	chr1:16158069-16163286	NHEK
SE_65551	chr1:16159644-16164074	Pancreatic_islets
SE_66771	chr1:16160195-16161474	Jurkat

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I015829

chr1

16155696

16165295

Enhancer Sequence

TCCTGACCTC AGGTGATCCG CCTGCCTCGG CCTCCCAAAG TGCTGGGATT ACAGTCGTGA 60
GCCACCGCGC CCAGCCACCA CCCACTCTTT AAGAAAATAC AAATCAACGC CATTTTTTGT 120
ACAATAAAAG TATGTGCTTT CTGTGTTAAA TGTAATGGTT AAAGGTATAA AGCATCTGTT 180
TTGGGCTCTG TCGCCCAGGC TGGAGTGCAG TGGCACGATC TCGGCTCACT GCAAGCACCG 240
CCTCCCGGGG TTCATGCCAT TCTCCTGCCT CAGCCTCCCG AGTAGCTGGG ACTACAGGCG 300
CCCGCCCCCA AGCCCGGCTA ATTTTTGTAT TTTTTTTTTT AGTAGAGACA GGGTTTCACC 360
GTGTTAGCCA GGATGGGCTC GATCTCCTGA CCTCGTGATC CGCCCGCCTT GGCTTCCCAA 420
AGGGCTGGGA TTACAGGCGT GAGCCACTGC GCCTGGCCCA AAGTATGTGT TTTATAAATA 480
AAAATGAACC CCAGGAATTA GGAGTGTTTA AACAGACCCT TCTAGTCTGT TCAAGTGCTG 540
GGCAATCATT CTTCGAATCT AAACTGCCCA GCTAATTAGA GCCATAATAA TTTACCTGAG 600
TTATCAGGCT ACTGTAACAG ATTCCAAATT TCCACTAAAA CTAATAGTTT TACACTATTT 660
CATTTTCATT GTGCAGACAA AAAAGAAAAA AAACACAGCA TTTAAAAAAA AATTCTGTAA 720
GCTCTCACCG CCAAAAGGAA GGATAGGCCA GGCGCGGTGA CTCACGCCTG TAAGCTCAAC 780
ACTTTGAGAG GATCTCTTGA GCCTAGACGC TCAAGACCAG CCGGGGCAAC ATGGTGAAAC 840
CGTCACTACA AAAGGTTAAC TTAGCCCAGC GCCAGGCACG GTGGCTTATG CCTGAAATCC 900
CAGCACTTTG GGAGGTCGAG GCGGACGGAT CACTTGGTCA GGAGATGGAG ACCATGCTGG 960
CCAACATGGT GAAACCCCAT CTCTACTAAA AATACAAAAA TTCGCCGGGC GTGCTGAGGC 1020
GTGCCTGTAG TCCCAGCTAC TCCCCGAGGC GGAAGTTGCA GTGAGCCAAG ATCCACTGCA 1080
CTCAAGCCTG GGTGACAGAG CGAGCCTCCT TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA 1140
GCCCAGCGTG GTGATTCGCG CCTATTCTCA GCTATTCAGG AGGCTGAGGT GGGAGGATAA 1200
CCTGAGTCCA GGGAGGTCGA GGCTGCAGTG AGCTGTGATT TCGTTACTGC AAAAAACAGA 1260
GACCTTGTCT TAAAAAAAAA AAAAAAAAAA GGATAGTTGA TGTCAAAAGA TACGGTATAA 1320
AAATTTAAAG CTCTATGCAG TGCTTTTGGT CATAATGAAA CTAAATTATT TGGAATCCAA 1380
AAGCCTCTTC TCAGATATTT CTTTCATCTG GAAGCCATCA AATCCTGATC GATTCCTTCA 1440
ACAGATGTTC TTTTACCTTT TCATCCTATC ATTATGAGCT TTACCTCCTG TTACTGAAAT 1500
AACTCCCTAT AATTATACAT AGTAAGAATA TAAAGGGCTG GCTCTTCTAT GTACTCACGC 1560
TGTGAAGAAA AACTTAAAAA AAATTAAACA AAAAAACCTT GTACGAAAGC AAAGGAAGAA 1620
GACAAATTTA GCAGCAGTTC TCTTGAATTT CCTGGCTTTG TTGATTTCGA ACCACAAGGT 1680
TAACATTAAA ACACAAAGAC TCACATTTAA ATATTTCTTT TGAAATCAGA AAAACAATAG 1740
CTCTTTGAAA TGACGCTGGA ACGCACACAA 1770