EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS094-03760

Organism

Homo sapiens

Tissue/cell

hMADS-3

Coordinate

chr1:226894000-226895110

Target genes

Number: 7
Name	Ensembl ID

PARP1	ENSG00000143799
AL359704.2	ENSG00000244110
RP11	ENSG00000229965
7SK	ENSG00000223282
ITPKB	ENSG00000143772
PSEN2	ENSG00000143801
RP5	ENSG00000233706

dbSUPER

Number of super-enhancer constituents: 16
ID	Coordinate	Tissue/cell

SE_03869	chr1:226893845-226894924	Brain_Anterior_Caudate
SE_04801	chr1:226893080-226894986	Brain_Cingulate_Gyrus
SE_05781	chr1:226892963-226895310	Brain_Hippocampus_Middle
SE_06710	chr1:226893703-226894880	Brain_Hippocampus_Middle_150
SE_07746	chr1:226893515-226894937	Brain_Inferior_Temporal_Lobe
SE_17296	chr1:226887872-226908646	CD4p_CD25-_CD45RAp_Naive
SE_18263	chr1:226887975-226903974	CD4p_CD25-_Il17-_PMAstim_Th
SE_22315	chr1:226893296-226894732	CD8_primiary
SE_25774	chr1:226893190-226894857	Duodenum_Smooth_Muscle
SE_40782	chr1:226893954-226894899	Left_Ventricle
SE_54498	chr1:226888025-226894921	Stomach_Smooth_Muscle
SE_58303	chr1:226819953-226937809	Ly1
SE_59629	chr1:226819233-226928465	Ly4
SE_60416	chr1:226819368-226929640	DHL6
SE_61009	chr1:226812849-226900772	HBL1
SE_62233	chr1:226813614-226929647	Tonsil

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I226705

chr1

226892964

226895310

Enhancer Sequence

GGGCTGGACA GTGGTTTCCT CCAAGTTAAG TACAAGAGAC TCCCTTTTAT CCATTTCCAT 60
ACCTAGGGTT CTTGACAGAA AACTTTCTAG AATGTGGGTT TTCTGAGCTG AGAGGGACTT 120
CAGAGATCAA CAAGTCTTTG GGTTCCAAAC CTGAAGACTG TGGGCTAGGA TCTAGACAGG 180
CTTCTTGTTA TCAATGTCCT GAAAGGGCAA CATGGCCTGT GAAATGTGCC TCTCTCTGGA 240
AAAAGGGTGT GTGGCTTTCT ACCACTTTCC AAAATGGCAT AAGACCCAAA AGGGGTTAAA 300
AAACACTGAT TTGGTCCAGC TCTTGGATTT CACAGATAAG ACCCAGAAAA CTCAGTTGAG 360
TGCTCCAGGT GACAGGGCAA ATTATATGTC ACCTTCTAAA GCTGGTTGGG GCCTGTGGGA 420
GGAGGAGGAG GATACCACTC GAGCTAACAG GTCTTTTCCA TTTCTAATTA CAAGGATTCC 480
ATGAAGTTTC CAGCCGCCAG TCTGTCTGGC TTTCTGGGCC TGGGTGTGTC AGTCGCCACT 540
CTGTTGCCGA GGTGCACAGA TGGCCAGGGG ACTGGGGTGG CTGGATATGG CCAGCAGCCA 600
GCTGGCTAGC ATCCAGGCAT CAGCTCTCAG CCAAATTTCT TCCTGGGGGC TCAAAAAGGG 660
GTTTCCAAAA AGTCCAGTCC ACAGAATGAG GCACAGTTCA ATCCTCTAGG GACTCATCAC 720
TAAGGGTGGT TGCATAAGAA AAATTATGAA AAACCATCAC CCTCCAGTAC CATATGGGCT 780
CTATTTCCAG GCCAGCGCAA TTAAGAACAA TTTCACAAGG AAATAAAGGG ACCTAGTAGA 840
ATAATTCAGA ATAAAAACAT TATTGCCAAA TAAAGTACAA TCTTTTTTTA TTTTTTATTT 900
ATTTATTTAT TTTTGAGATG GAGTTTAGCT CTTTCGCCCA GGCTGGAGTG CAGTGGTGCT 960
ATCTCGGCTC ACCGCAACCT CCGCCTCTCA GGTTCAAGCA ATTCTCCTGC CTCAGCCTCC 1020
CAAGTAGCTG GGATTACAGG TGCCCACCAC TACACCTGGC TAATTTTTGT ATTTTTTAGT 1080
AGAGACGGGG TTTCACCATG TTGGCCAGGC 1110