EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS094-01990

Organism

Homo sapiens

Tissue/cell

hMADS-3

Coordinate

chr1:109419850-109420520

Target genes

Number: 19
Name	Ensembl ID

FAM102B	ENSG00000162636
PRPF38B	ENSG00000134186
FNDC7	ENSG00000143107
STXBP3	ENSG00000116266
RP11	ENSG00000228076
GPSM2	ENSG00000121957
AKNAD1	ENSG00000162641
CLCC1	ENSG00000121940
WDR47	ENSG00000085433
RANP5	ENSG00000228054
TAF13	ENSG00000197780
TMEM167B	ENSG00000215717
SCARNA2	ENSG00000238881
RP5	ENSG00000251484
KIAA1324	ENSG00000116299
C1orf194	ENSG00000179902
SARS	ENSG00000031698
PSRC1	ENSG00000134222
PSMA5	ENSG00000143106

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

FOXC1	MA0032.2	chr1:109420397-109420408	TAAGTAAACAT	+	6.02
SOX10	MA0442.2	chr1:109419968-109419979	TCCTTTGTTTT	-	6.32
SPIC	MA0687.1	chr1:109420389-109420403	AAAAAGAGTAAGTA	+	6.52
Sox3	MA0514.1	chr1:109419969-109419979	CCTTTGTTTT	+	6.02

Enhancer Sequence

GTGAGCGCTT CCGCGACGCG GGTTCTGAGG CGTTTGAGGG GCTCTCGGAG GGAGGTGACA 60
GGGAGGGGTG CGTGTGCGTG CGTGTGGGGC TTCTGTGTCC AGAGGTCTGG GGGTGACGTC 120
CTTTGTTTTG GGCAGGAGGC GGGCTGGGGG CTTGCGGGAC CTGTGGGCGC TGCGGGGACG 180
CGGCGTCGAT GCTCAAGAAA CCAGAAACTC GGCTTGAGGA GTTGCTGCTT TTTTGTCGGA 240
AGGTCTTCAA ATGAGAGTAA AGCGTTAAGA GCCTCACTCC TGAGTCTTTT TTTTTTTTTA 300
AGATAAAAAC TATACTAGAG TCCAGCGACT TCTTACCACT CTGAATGTGA GTAACAAATT 360
GTGAATCAAA GCCCGAATCC CCGTGGAATT CATTCCGAGG CTGATTGCAA TCACTTGGAG 420
TCGGGCGCGT CCTACCTAAA CCAGGCAGTT TATGGCAAAT ACCTGCCTTG ACCGTGCTTA 480
AATTAGTGAA CTTTTGGGCA CCAACTGGTC GATTTACCAT AGAAATTGGT AGTTGCTGCA 540
AAAAGAGTAA GTAAACATAA AACGTTAAGA AAACTCTTTC CTGAAATCTA TAGAATACCT 600
TCGAATAAAA AAAAATCTGT AATTTCCTTG TTTTAATAGT AACCAGTTAG AGCATTTGAA 660
CTAGTAGCAT 670