EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS094-01019

Organism

Homo sapiens

Tissue/cell

hMADS-3

Coordinate

chr1:53507690-53509050

Target genes

Number: 20
Name	Ensembl ID

snoU13	ENSG00000239063
GPX7	ENSG00000116157
FAM159A	ENSG00000182183
SELRC1	ENSG00000162377
RP11	ENSG00000233664
AC099784.1	ENSG00000239640
ZYG11B	ENSG00000162378
U2	ENSG00000252018
ZYG11A	ENSG00000203995
RP4	ENSG00000230953
ECHDC2	ENSG00000121310
SCP2	ENSG00000116171
PODN	ENSG00000174348
HIGD1AP11	ENSG00000227644
SLC1A7	ENSG00000162383
CPT2	ENSG00000157184
RP5	ENSG00000236723
C1orf123	ENSG00000162384
MAGOH	ENSG00000162385
LRP8	ENSG00000157193

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

HNF1A	MA0046.2	chr1:53509006-53509021	TGTTAAACATTAATT	-	6.15
HNF1B	MA0153.2	chr1:53509007-53509020	GTTAAACATTAAT	+	6.04
Twist2	MA0633.1	chr1:53509000-53509010	ACCATATGTT	+	6.02

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I053042

chr1

53508612

53509788

Enhancer Sequence

GAGATGAATG AAAGAAAAAT TGAGCAGTAG TTAGGGCATC CGTCTAGTGT GGGCAGCATG 60
GCTTTGTTGT GGAAGTTTCC TGAATTATAC AGAGTCCCTT TTTTTCCTTC CAAAATGAAT 120
GGGAAAAAAA TGGCCATAGC TTTGCATTCT ATGAGCTGCC ACTCTAAGGT GGTGTACAAA 180
GAAAAGCTAA AGGCTTTATC TGGATTCCAG CTTTTAGAAA TAGAACTTCA GGAATTATAG 240
TAGTGATCTT TTTTTTTTTT AATGACTGAA GGTTAATGGT TACTTTTATA TTTAGATATG 300
CCCATACTGA TATTAAGGTT GTTTTTTTTT TAATTTCTCC TTTTCCTCCT ATTTTGTTGT 360
TGGTTGATAG CGTTGGTTTG TCATCAAAGA TCAAATGCTG ATGGAAAGCT GTTGAATGAT 420
TTTGGAAAAG CTGTGTTCCC TCCAGATACG TTCTTGCCAT GTTCTTCCCA CATTAGGTGC 480
TGTACCCCAG ACCCCAAGGG ATCTTACCCT GGGGAAGGAT AGTTTCTGCT GAAACTGACA 540
CTTATTGGCA GCCAAGAGTG GTGTTGAAAT ACAGACTTAC CAAGAAAAGC CATCACTGGA 600
AATTGCCAGC TCCTTTTACA TCAACCAACA AATGGCTATT TGTTAGAGAT TAGCTACATT 660
AAAGCATTAA TAACCTGTCC TAGTTTGAAC CGGCATCTTA AGGAGAATTG CTAGTTCATT 720
TGGCATGTAC ATAATGTTAG GGGGTTTGTT TATTGTTAAC AAAGTAAGAT TTACTTAAAT 780
GTATTTTGTA AGAGCTTGGT AATGATTACT GAGATGATTA TATTATGGAT TTTTAGATTT 840
TGTGCATTTT CCATCATCTC TTTTTGCTTC CTGGGTGCCT TTTAGTATCT TCTCCATGAG 900
TTCTGCCTTT CCCTCATCTC CTTTGAAACG ACTCATATAG CATATCTCCA GGAGGCCATC 960
TTTGATTAAT CTAACATAAC ATATTATTCC TTCATTCCTT TATTCTGACC CTTCAGCACC 1020
TTGAGTTCTC AACTCTGTCC CTTTATGGGC AGCATGATAC AGAAAGCTTC AGGGTCTCCT 1080
ATCCCCAAGG TAAACTAGAA AGAGCATAGC CAAAAGAAAC AGCCAAACCT GGGTTCAGAT 1140
CTAGGCTCTG TCACTCAGAG GGTATATACC TTCCCTGAGA GTCCAATGGT CTTATCTAAA 1200
TATGATGAGA ATAATTTCTA TCCATAGAAC TGTTGTGGGG ATTAAATGAG ATAAGGAAGA 1260
TAGAGCACCT AGTGTAGTAA GTGCTCAGTA AATCATTGTT TCCTCCCCAG ACCATATGTT 1320
AAACATTAAT TTTGCTTAGA CACATAGGTT TGTCTCAGCC 1360