EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS094-00564

Organism

Homo sapiens

Tissue/cell

hMADS-3

Coordinate

chr1:28680440-28681480

Target genes

Number: 29
Name	Ensembl ID

STX12	ENSG00000117758
RPA2	ENSG00000117748
XKR8	ENSG00000158156
AL512288.1	ENSG00000240750
EYA3	ENSG00000158161
RP5	ENSG00000228589
RNU7	ENSG00000252429
AL353354.1	ENSG00000215902
DNAJC8	ENSG00000126698
ATPIF1	ENSG00000130770
SESN2	ENSG00000130766
MED18	ENSG00000130772
RP1	ENSG00000229820
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
snoU13	ENSG00000238821
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNORD99	ENSG00000221539
SNORA61	ENSG00000207311
SNORA44	ENSG00000207314
SNORA16A	ENSG00000207070
SNHG12	ENSG00000197989
RAB42	ENSG00000188060
TAF12	ENSG00000120656
RNU11	ENSG00000209804
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

GATA2	MA0036.3	chr1:28681102-28681113	TTCTTATCTGT	+	6.14
Gata1	MA0035.3	chr1:28681102-28681113	TTCTTATCTGT	+	6.62
IRF1	MA0050.2	chr1:28681088-28681109	TCTGAGTTTCAGTTTTCTTAT	+	6.21

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I028350

chr1

28677288

28681588

Enhancer Sequence

GTGATCTGCC TGCCTCAGCC TCCCAAAGTG CTGGAATTAC AGGCTTGAGC CATCATGCCC 60
GGCCGATCAT GACCATTTAA ATTTTCATTA AGGTACTTCA TGCAGTGCTT GGCACATGGT 120
TGATGCTCAA ACCTATAGCT ATTGCAATAA GTTACCTACA GTTTCCAACT GCTAGGGTTA 180
TGGCTTTGTT ATTTATTTTT TAAAAATTGT TAGTGATTAA CACGATCTTT AGCCTAGTAC 240
CTAGGAACTT GTCTCATCAT CTTGGTAACT GACAAGGCCT GGCACCATGC CTGGCATCAT 300
GCCTGGCACG TAGTAGGCAC TCAGTACATA GCTGTTGAAT CATATTAAAT TGAAATGAAT 360
ATCCATTCAG ACATTAGCAC AAGAGCTGTG TCACTAAATA GCTGTCATTG CAAAATTTAC 420
AGACAACAAT GACACAGACA TGCTTGCATA GTTTGTAAGC CACGATTTCA ACTTCCTGCA 480
TTGCAGACAT CTCAATTAAT AATCCCATTC CACTCACATG ATCCTTAGAA AGAAAGGGCA 540
AACTAATAGA AATATCTGGT TTAGCAACTA AAAGAATGAG CTCTAGTCTA GGTAGATAGA 600
GGCTTACATC CTGGCTTCAA TATCACCTAG TGGGTCAGTT ACTTAATCTC TGAGTTTCAG 660
TTTTCTTATC TGTGAGAAGG GAATAATAAT AGAATCTATT TAATGAAGTT ATTGTGAGAA 720
TAGTGCCTTC CAACTGCTGT TCTCTTTGCC TGAAACACTC GTTTCATGAA GGGTGAAACC 780
CCATGTTTGG ATTTTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGAGAGAG AGAGAGAGAG 840
ACAGAGAGAC AGGGTCTCGC TCTGTCGCCC AGGCTGGAGT GAAGTGACTT GATCTTGGCT 900
CAATGCAACC ATCGCCTCCC AGGCTCAAGC TATTCTCCTG CCTCAGCCTC CCAAGTAGCT 960
AGGATTATAG GCATGTGTCA CCATGCCCAG CTAATTTTTG TATTTTTATT TATTTTTTGA 1020
AATTATCTTT TTTTCTTTTT 1040