EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS094-00394

Organism

Homo sapiens

Tissue/cell

hMADS-3

Coordinate

chr1:22366310-22366980

Target genes

Number: 8
Name	Ensembl ID

USP48	ENSG00000090686
RP11	ENSG00000232037
AL590556.2	ENSG00000243734
RP1	ENSG00000228397
LINC00339	ENSG00000218510
CDC42	ENSG00000070831
WNT4	ENSG00000162552
ZBTB40	ENSG00000184677

dbSUPER

Number of super-enhancer constituents: 17
ID	Coordinate	Tissue/cell

SE_09508	chr1:22365867-22367883	CD14
SE_10506	chr1:22365723-22368587	CD19_Primary
SE_11109	chr1:22363851-22370243	CD20
SE_12053	chr1:22365727-22368757	CD3
SE_13472	chr1:22365866-22368295	CD34_Primary_RO01536
SE_14473	chr1:22363764-22368894	CD4_Memory_Primary_7pool
SE_15837	chr1:22365158-22367577	CD4_Naive_Primary_7pool
SE_16995	chr1:22365866-22367594	CD4p_CD225int_CD127p_Tmem
SE_17408	chr1:22363787-22368900	CD4p_CD25-_CD45RAp_Naive
SE_18011	chr1:22365280-22368936	CD4p_CD25-_CD45ROp_Memory
SE_18436	chr1:22365874-22367566	CD4p_CD25-_Il17-_PMAstim_Th
SE_19267	chr1:22365717-22367353	CD4p_CD25-_Il17p_PMAstim_Th17
SE_20610	chr1:22363855-22368728	CD56
SE_20888	chr1:22365862-22367686	CD8_Memory_7pool
SE_22067	chr1:22365449-22367793	CD8_Naive_8pool
SE_22843	chr1:22365704-22368722	CD8_primiary
SE_54448	chr1:22365752-22367519	Spleen

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I022037

chr1

22363852

22370535

Enhancer Sequence

AAAAACTACA AAGGGAAGGC TTCACTTCTC TGTTCTGCAT CTGACCTTGC AGTGAGATGA 60
GGTTAACTGC CCTTAGTTGG CTCTGCAAAG CGCAGGGGCC TCTTTAGGTG CCTAGCAACA 120
ACTTGACTAC CCAGAATGGT GATTTTGAAG CTGGGTGTGG TCTCCTGGGC AGGAAGCCAC 180
CAACACCGCC AGAGCAGCCA GGGCCTCCCC TTCACTTCCT CTGAGCCAAA ACTCCGCCTC 240
CAATTGGGGC CAATACTTAT TGCTTTGAGC CCTGTCTTAG AAACACAAAT GGAAGGTTTC 300
TAGCAACAAT AACTTCTACC ACTTAGATGT GTGATGTCAG ACAAGTCATG CCACCTTTCT 360
GAGCTTCAGC TCCTATACCT GTCTTGGTCC TGGCTTATTC TCAGGCAGGG TTACCCTAGC 420
ACAGCAGCCC AGGTCCACAA ATACTCAGTA AATGCTACTG TATCTGAATC TGAATCTGCT 480
TAATTAGGGG AAGATTCAGT GAGTGACCTT TTCTCAGCTG TCCCTTGGAT CTTGTTCTTT 540
TGACCCTCTC TCTGCAGGCA GCTCCATCTT ATGTCAAATT TCTATACGTC AAATCCTGTT 600
CTTGGCCAGG CATGGTGACT CACGCCTGTA ATCCCAACAG TTTGGGAGGC TGAGGCAAGA 660
GGATCGCTTG 670