EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS088-04965

Organism

Homo sapiens

Tissue/cell

HeLa-S3

Coordinate

chr1:203925840-203927080

Target genes

Number: 15
Name	Ensembl ID

ATP2B4	ENSG00000058668
RP11	ENSG00000236035
SNORA77	ENSG00000221643
LAX1	ENSG00000122188
ZC3H11A	ENSG00000058673
ZBED6	ENSG00000257315
SNRPE	ENSG00000182004
CBX1P3	ENSG00000237379
ETNK2	ENSG00000143845
REN	ENSG00000143839
KISS1	ENSG00000170498
GOLT1A	ENSG00000174567
PLEKHA6	ENSG00000143850
PPP1R15B	ENSG00000158615
MDM4	ENSG00000198625

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Gata4	MA0482.1	chr1:203926080-203926091	AGGAGATAAGA	-	6.14
Nr2f6(var.2)	MA0728.1	chr1:203926546-203926561	TGACCTCGTGACCTG	-	6.32
Nr2f6(var.2)	MA0728.1	chr1:203926538-203926553	CGATCTCTTGACCTC	-	6
Zfx	MA0146.2	chr1:203926881-203926895	CCCGCCTCGGCCTC	+	6.01

Enhancer Sequence

TTCCCCACAA AGGATAAGCT AGTTGATAAG TTACCAAAGT TGCCATTTTA GAGATGGAAA 60
TTGACTGAGG AGGGAAGGTC TTTTATTGGA GAGTATATAG TATGAGCAGA TCATTCTGTC 120
TCAGAGGGGT TAATTCCTGA AATTAGACAG AAGACCCTTT TCTTTCCAAT AATGAAGTTA 180
TAAATATCAG CTTGTTGAAG CCACTGGCTG AGGTATTGGG GAAGGGGAAG AGGGTGGTAG 240
AGGAGATAAG ACAGTAGGGA AAGACAAGAG CCCATACTCT TAGTGGGGAG AACTCTTGGA 300
GCAGTTCTCT TTTTGGATCT TTGAACTCTG AAACCGTTGG CGGCAGCGTT CAGTCACTGA 360
CAGCACAAGT TCCACTGAAT TGATTCGAGT TGAGTGATTT CAAAAGCCTT GGTCTCAGGA 420
GATTTAACTT TCCTACTGGG CAGTGGTTCA CTTTAAAACA CAAAAAAACA AATAAAACCT 480
TTTTTTTTGT TTTGTTTTAG ATGGAGTCTT GCTCTGTTGC CAGGCTGGAG TGCAGTGGCA 540
TGATCTTGGC TCACTGCAAC CTCTGCCTCC TGGGTTCAAG CAATTCTCCT GCCTCAGCCT 600
CCTGAGTAGC TGGGACTACA GGTGCCCGCC ACCACGCCTG GCTAATTTTT GTGTTTTTAG 660
TAGAGATGAG GTTTCACCAT TGTTGGCCAG GATGGTCTCG ATCTCTTGAC CTCGTGACCT 720
GCCCGCTTCA GCCTCCCAAA GTGCTGGGAT TACAGGCGTG AGCCACCGCA CCCAGCCAAC 780
AAAACCATTT TTTTTTTTTT TTTTTTTTTT TTTTTTAAGA CGGAGTCTCG CTCTGTCGCC 840
CAGGCTGGAG TGCAGTGGCA CAATCTTGGC TCACTGCAAG CTCCGCCTCC GGGGTTCACG 900
CCATTCTCCT GCCTCAGCCT CCCAAGTAGC TGGGACTACA GGCGCCCGCT ACCACGCCCG 960
GCTAATTTTT TGTATTTTTA GTAGAGATGG GGTTTCACCG TGTTAGCCAG GATGGTCTCG 1020
ATCTCCTGAC CTCGTGATCC GCCCGCCTCG GCCTCCCAAA GTGCTGGGAT TACAGGCGTG 1080
AGCCACTGCG CCCGGCCAAC AAAACCATTT TTTAAGAAAT CCTAAGAAGT AACTGATACC 1140
TAAAATGCTC TGTCTTGAGT CATGAGATCC ATCAGTTCTT GATATTGCCT AGACTTGCAT 1200
CTAGAACTAC ATTGTAAAAT CTTTTTAGGC ATGTGTTAGA 1240