EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS088-01297

Organism

Homo sapiens

Tissue/cell

HeLa-S3

Coordinate

chr1:28860290-28861560

Target genes

Number: 16
Name	Ensembl ID

RPA2	ENSG00000117748
MED18	ENSG00000130772
PHACTR4	ENSG00000204138
RP1	ENSG00000229820
U6atac	ENSG00000221216
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNORA61	ENSG00000207311
SNORA44	ENSG00000207314
SNORA16A	ENSG00000207070
SNHG12	ENSG00000197989
RAB42	ENSG00000188060

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ALX3	MA0634.1	chr1:28861001-28861011	TTTAATTAGA	-	6.02
SOX10	MA0442.2	chr1:28860699-28860710	TTCTTTGTTTT	-	6.62
SPI1	MA0080.4	chr1:28860300-28860314	AAAAAAAGGAAGTA	+	6.3
SPIC	MA0687.1	chr1:28860300-28860314	AAAAAAAGGAAGTA	+	6.79

Enhancer Sequence

AAAAAAAAAA AAAAAAAGGA AGTAATCAGA ATATCAGAAT TATATTTTTT TCTTTTCTTT 60
TCTTTTCTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTGAG 120
ACAGAGTCTT GCTCTATCAC CCAGGTTGGA GTGCAATGAC ACAATCTCGG CTCAGTGCAA 180
CCTCTGCCTC TCGGGCTCAA GCAATTCTCC TTCCTCAGCC TCCCGAGTAG CTGGGATTAC 240
AGGCATGCGC CACCACACCT GGTTAATTTT TGTATTTTTA GTAGAGACGG GGTTTCACCA 300
TGTTGGCCAG GCTGGTTGTG AATTTCTGAT CTCAGGTGAT CCGCCCGTCT GGGCCTCCCA 360
GAGTGCTGGA TTGCAGGCTT GAGCCGCCAC GTCTGGCCTC TTTTCTTTTT TCTTTGTTTT 420
GAGACGGAGT CTCGCTTTGT CGCCCAGGCT GGAGTGCAGT GGCGCGATCT CGGCTCACTG 480
CAAGCTCTGC CTCCCTGATT CACGCCATTC TCCTGCCTCT GTCTCCCGAG TAGCTGGGAC 540
TACAGGCGCC CGCTACAACG CCCGGCTAAT TTTTTGTATT TTTTGGTAGA GACGGCATTT 600
CACCGTGTTA GCCGGAATGG TCTCGATCTC CTGACCTCGT GATCGCCCGC CTTGGCCTCC 660
CAAAGTGCTG GGATTACAGG CATGAGCCAC CGCGCCCGGC CTCTTTTCTT TTTTAATTAG 720
AGACGAGATC CTGCTCTGTC ACCCAGGCCA GAGTGCAATG GCATCGTCTT AGCTCATTAC 780
AGCCTCAACT TCCTGGGCTC AGGTGATTTC TTCCACCTCA GCCTCGCAAG TAGCTGGTAC 840
TAGAGGCTTG TGCCACCACG CCCAGCTAAT TTTTGTATTT TTTGTAGGGA CGGGGTTTCA 900
CCGTGTTGCC CAAGCTGGTC CTGAGCTCAA GCGATCTGCC CACCTGGGCC TACCAAAGTG 960
CTAGGATTAC TGGCATGAAT TACCATGCCT GGCCCAGAAT AGTATATTGA GTGCCCATTT 1020
ACTTGCCACA CAGTTTCAAT GATTATCAGC TTGTGGCCAG ACTTGTTTAT CTCTATTTGC 1080
ATCCGCTCTC TGACTCCTTG ATTATTTTAA TGCAAGTCGC AGACCATAAA TGATTTCATT 1140
CATAAGTATT TGAGTATGTG GCCTGGCTCC TGCCCACTTC TCCATCCCCA TCTGGTGCCA 1200
CTGCCCTTCT GGATTTCACT GGCACGGGGC AGGCAGGACT GGCTGATAAG TGCCCTGTCC 1260
CTCCCTTCTA 1270