EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS088-01135

Organism

Homo sapiens

Tissue/cell

HeLa-S3

Coordinate

chr1:26606700-26607250

Target genes

Number: 23
Name	Ensembl ID

SEPN1	ENSG00000162430
C1orf135	ENSG00000127423
RP1	ENSG00000236528
PAQR7	ENSG00000182749
STMN1	ENSG00000117632
PDIK1L	ENSG00000175087
FAM110D	ENSG00000197245
ZNF593	ENSG00000142684
RP11	ENSG00000236782
CNKSR1	ENSG00000142675
CEP85	ENSG00000130695
SH3BGRL3	ENSG00000142669
CD52	ENSG00000169442
UBXN11	ENSG00000158062
AIM1L	ENSG00000176092
LIN28A	ENSG00000131914
DHDDS	ENSG00000117682
RP3	ENSG00000223583
HMGN2	ENSG00000198830
RPS6KA1	ENSG00000117676
ARID1A	ENSG00000117713
SFN	ENSG00000175793
NUDC	ENSG00000090273

TF binding sites/motifs

Number: 1

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ZNF263

MA0528.1

chr1:26607064-26607085

TCCCTCTCTTCATCCTGCACC

dbSUPER

Number of super-enhancer constituents: 27
ID	Coordinate	Tissue/cell

SE_09234	chr1:26600437-26620418	CD14
SE_11598	chr1:26601677-26620618	CD20
SE_12127	chr1:26606541-26607301	CD3
SE_13098	chr1:26603815-26607408	CD34_Primary_RO01480
SE_14176	chr1:26601946-26609188	CD34_Primary_RO01549
SE_15660	chr1:26603683-26607748	CD4_Memory_Primary_8pool
SE_16821	chr1:26604088-26607830	CD4_Naive_Primary_8pool
SE_17222	chr1:26604570-26608249	CD4p_CD225int_CD127p_Tmem
SE_17706	chr1:26601754-26619073	CD4p_CD25-_CD45RAp_Naive
SE_18032	chr1:26601635-26619607	CD4p_CD25-_CD45ROp_Memory
SE_18600	chr1:26600628-26620343	CD4p_CD25-_Il17-_PMAstim_Th
SE_19301	chr1:26601729-26619077	CD4p_CD25-_Il17p_PMAstim_Th17
SE_20500	chr1:26601922-26608563	CD56
SE_21239	chr1:26601707-26607850	CD8_Memory_7pool
SE_22719	chr1:26601924-26619047	CD8_primiary
SE_23529	chr1:26601993-26608669	Colon_Crypt_1
SE_24040	chr1:26602131-26608022	Colon_Crypt_2
SE_26906	chr1:26601877-26608870	Esophagus
SE_31862	chr1:26601922-26609645	Gastric
SE_40404	chr1:26600567-26608639	K562
SE_41449	chr1:26600620-26613332	Left_Ventricle
SE_42616	chr1:26600690-26613056	Lung
SE_50183	chr1:26601943-26618863	Sigmoid_Colon
SE_52659	chr1:26601958-26608649	Small_Intestine
SE_53610	chr1:26604029-26608513	Spleen
SE_55161	chr1:26605262-26607456	Thymus
SE_65211	chr1:26601963-26607452	NHEK

Enhancer Sequence

GCGCGCCCGG ACTGGCGCTG GGGGAAAGCG CAGGGCTGTA TCCCGGTGCT TTGGACCCTA 60
GCGCCCGGGA CCCACCCCCA GGACGGGGGC GGGGTGGGGG GAGTGCGTCG GCGAGGTGCT 120
GGGCACGGTC TCCCGGACCC GGTCCCGAGG CCCCATCCTG AATGTCTTCA TCGGGCATCC 180
TGGGTCCTTT GCAGCCGCGG CATGAACTTC CCGTGCCCAT CCCCCATCAA CCCCACACCC 240
ATTCTCTGCA CTCCCACTAC CGGGCTGACC CTGACCACGA CCGCAGCCTG CCCTCCCCTC 300
CCCTCCCCAC CCTGAGCCTG ATCCCACTTC CCTTCACTCT GACCCCCTCC CCCGTGGCTG 360
ATAATCCCTC TCTTCATCCT GCACCACCTC AAGCCTGACT CATCCTCCCA ACTCCTAGAG 420
GCCAGAACCC TCCCCTAGTG TGGAGGGGAA TGGGGGGACA AAAGCTCCTG GTCACAGCCT 480
CTCTCACCCT GCCCAGCATT TCCCCCATAA ATCCTCCAGC CTATCCACTA ACCCCTACCC 540
ACCCTCTGTC 550