EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS074-00207

Organism

Homo sapiens

Tissue/cell

GM19239

Coordinate

chr1:25848590-25849300

Target genes

Number: 11
Name	Ensembl ID

SYF2	ENSG00000117614
RP3	ENSG00000261349
SDHDP6	ENSG00000224183
RP11	ENSG00000259984
TMEM50A	ENSG00000183726
C1orf63	ENSG00000117616
SDHDP1	ENSG00000238084
RHCE	ENSG00000188672
TMEM57	ENSG00000204178
LDLRAP1	ENSG00000157978
STMN1	ENSG00000117632

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RFX1	MA0509.2	chr1:25848988-25849004	GGTCACCATGGTAACC	-	6.48
RFX1	MA0509.2	chr1:25848988-25849004	GGTCACCATGGTAACC	+	6.49
RFX2	MA0600.2	chr1:25848988-25849004	GGTCACCATGGTAACC	+	6.63
RFX2	MA0600.2	chr1:25848988-25849004	GGTCACCATGGTAACC	-	6.78
RFX5	MA0510.2	chr1:25848988-25849004	GGTCACCATGGTAACC	+	6.58
RFX5	MA0510.2	chr1:25848988-25849004	GGTCACCATGGTAACC	-	6.71

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

SE_65397

chr1:25846966-25851550

Pancreatic_islets

Enhancer Sequence

GAGCTGGGCT TCCTCAAACT TGGCAATCAC TGGAGCTCTG TCCTAAAGCT TAGGAAATCA 60
GCTTTCCACC CAATGGTGAT GCTGTCTGGA TCTTGTGTGG CCTTGGTCAA GTCACACACT 120
CTCCCTTGAG CCCTGAATTC CCCATCCCGA TATAGACCAG CTCTGACAGC ATGGCTGCTG 180
GGCCTGCCGA AGGGGTGGGC AGGGTGGGCA GGTCCTCTCC CCCCACCCAC TTTCTCCTTG 240
GAGAACCCCA GGATCCTGCT CAGAGGAGGA AGCAGTGCTC CCCCTAGGGA AGCGGATCCC 300
AGGGGACTCC AGAATCCTCC CCCACACTCT GCGGGCAGCC AGCACTAAGT GCTGTATTAA 360
TTATTACCAG CCTCCCCTGG GAAGCAAATT CAAAGTGAGG TCACCATGGT AACCCAGACA 420
CTGCAATGTG ACCAAATTTT TAAAGTGCTC AACATGTTCC AGGCAAATTA CCTATCGATG 480
GAAGAGAAAA GAATGAGGCT TCAATCCCAC AGTTCAGTGG CCTTAGGAAG AAAAGCCCAG 540
AAGCTCCCAT GGGGCCTGGA ACCTTTCTAC AAAGGAGTGA GGCGGGGACA GGGATGGGAG 600
ATCAGAGCCC CACCTCGAGA GAGCAGAGCA GAGATGGAAA TGACATCCAG GGTCCTGAAT 660
GATCTCTTAT GGGTGGGCAT GAGGCCTGGC CAGAGAGCCA GAGGGCCTGG 710