EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS061-01955

Organism

Homo sapiens

Tissue/cell

GM12892

Coordinate

chr1:203257440-203257630

Target genes

Number: 3
Name	Ensembl ID

RP11	ENSG00000236523
CHIT1	ENSG00000133063
BTG2	ENSG00000159388

dbSUPER

Number of super-enhancer constituents: 58
ID	Coordinate	Tissue/cell

SE_03091	chr1:203255627-203257604	Bladder
SE_03985	chr1:203254833-203261702	Brain_Anterior_Caudate
SE_04945	chr1:203254677-203261489	Brain_Cingulate_Gyrus
SE_05898	chr1:203254744-203261699	Brain_Hippocampus_Middle
SE_06796	chr1:203254691-203261440	Brain_Hippocampus_Middle_150
SE_09289	chr1:203253137-203261383	CD14
SE_10170	chr1:203254872-203261295	CD19_Primary
SE_10871	chr1:203254420-203281750	CD20
SE_11831	chr1:203255173-203261092	CD3
SE_13716	chr1:203255728-203257853	CD34_Primary_RO01536
SE_14427	chr1:203255695-203261338	CD4_Memory_Primary_7pool
SE_15408	chr1:203255598-203257816	CD4_Memory_Primary_8pool
SE_15994	chr1:203255542-203257898	CD4_Naive_Primary_7pool
SE_16309	chr1:203255144-203261243	CD4_Naive_Primary_8pool
SE_16865	chr1:203255618-203261174	CD4p_CD225int_CD127p_Tmem
SE_17312	chr1:203254852-203262070	CD4p_CD25-_CD45RAp_Naive
SE_17785	chr1:203255097-203261829	CD4p_CD25-_CD45ROp_Memory
SE_18348	chr1:203255084-203261818	CD4p_CD25-_Il17-_PMAstim_Th
SE_19143	chr1:203255570-203261269	CD4p_CD25-_Il17p_PMAstim_Th17
SE_19992	chr1:203254864-203261519	CD56
SE_20762	chr1:203255394-203261433	CD8_Memory_7pool
SE_21467	chr1:203255647-203261152	CD8_Naive_7pool
SE_21932	chr1:203255337-203261424	CD8_Naive_8pool
SE_22316	chr1:203255232-203261677	CD8_primiary
SE_23441	chr1:203255077-203257970	Colon_Crypt_1
SE_24037	chr1:203255133-203257912	Colon_Crypt_2
SE_24893	chr1:203255051-203257952	Colon_Crypt_3
SE_25439	chr1:203254866-203258080	DND41
SE_25807	chr1:203254669-203261798	Duodenum_Smooth_Muscle
SE_26687	chr1:203255096-203261452	Esophagus
SE_27668	chr1:203254737-203262056	Fetal_Intestine
SE_28606	chr1:203254749-203261867	Fetal_Intestine_Large
SE_29589	chr1:203254843-203261369	Fetal_Muscle
SE_30896	chr1:203255056-203262032	Fetal_Thymus
SE_31419	chr1:203255131-203261567	Gastric
SE_32519	chr1:203255057-203261058	GM12878
SE_37070	chr1:203254542-203261518	HSMMtube
SE_40823	chr1:203254932-203257925	Left_Ventricle
SE_42244	chr1:203254938-203261444	Lung
SE_43501	chr1:203254704-203262029	MM1S
SE_47668	chr1:203255131-203261337	Pancreas
SE_48192	chr1:203255016-203258041	Psoas_Muscle
SE_48633	chr1:203254956-203257904	Right_Atrium
SE_50070	chr1:203254856-203261864	Sigmoid_Colon
SE_51128	chr1:203254701-203261491	Skeletal_Muscle
SE_52362	chr1:203254784-203261941	Small_Intestine
SE_53333	chr1:203254922-203261648	Spleen
SE_55095	chr1:203255227-203261000	Thymus
SE_58291	chr1:203236214-203310877	Ly1
SE_58901	chr1:203236169-203298087	Ly3
SE_59628	chr1:203236329-203298077	Ly4
SE_60396	chr1:203236100-203315897	DHL6
SE_61013	chr1:203236073-203298344	HBL1
SE_61446	chr1:203236043-203309894	Toledo
SE_62225	chr1:203236326-203298200	Tonsil
SE_63328	chr1:203234993-203265727	NCI-H82
SE_65315	chr1:203254676-203261384	Pancreatic_islets
SE_67145	chr1:203254704-203262029	MM1S

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I203284

chr1

203253530

203261919

Enhancer Sequence

GCTGTTTTCA AAGTATTTTC ACAAACGTTT ATTCTCTTGA CTCTCACAAT AAACGAAGCC 60
AGCCAGAAAG TATTCTCCCC ATTTCAGTGA TAAGGAAATG GAGGCTCAGA AGGGTGGAAT 120
GGCCCAGGGC AGGGCAAAGC TGGGGTGGAA GCATCGGTCT TGTGCTTCCA CACTCATTGC 180
ACTTTCTTCC 190