EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS061-00889

Organism

Homo sapiens

Tissue/cell

GM12892

Coordinate

chr1:45286380-45286550

Target genes

Number: 19
Name	Ensembl ID

TMEM53	ENSG00000126106
C1orf228	ENSG00000198520
RNU5F	ENSG00000199377
RP4	ENSG00000259794
RNU5D	ENSG00000200169
KIF2C	ENSG00000142945
RPS8	ENSG00000142937
RP11	ENSG00000225721
SNORD46	ENSG00000200913
BEST4	ENSG00000142959
PLK3	ENSG00000173846
TCTEX1D4	ENSG00000188396
BTBD19	ENSG00000222009
RNU5E	ENSG00000202444
PTCH2	ENSG00000117425
RP5	ENSG00000226499
CCNB1IP1P1	ENSG00000229815
EIF2B3	ENSG00000070785
UROD	ENSG00000126088

dbSUPER

Number of super-enhancer constituents: 37
ID	Coordinate	Tissue/cell

SE_01008	chr1:45284702-45286465	Adrenal_Gland
SE_02388	chr1:45285389-45286406	Astrocytes
SE_03003	chr1:45284788-45286511	Bladder
SE_03831	chr1:45284731-45286828	Brain_Angular_Gyrus
SE_04529	chr1:45284679-45287127	Brain_Anterior_Caudate
SE_09485	chr1:45284345-45286820	CD14
SE_10663	chr1:45284701-45286756	CD19_Primary
SE_11912	chr1:45284688-45286583	CD3
SE_12954	chr1:45284861-45286558	CD34_Primary_RO01480
SE_13535	chr1:45284703-45286988	CD34_Primary_RO01536
SE_14211	chr1:45284654-45286733	CD34_Primary_RO01549
SE_16953	chr1:45284705-45286487	CD4p_CD225int_CD127p_Tmem
SE_20425	chr1:45284704-45286728	CD56
SE_21894	chr1:45284726-45286859	CD8_Naive_7pool
SE_23915	chr1:45284879-45286649	Colon_Crypt_2
SE_26084	chr1:45284663-45286907	Duodenum_Smooth_Muscle
SE_26880	chr1:45284671-45286838	Esophagus
SE_27824	chr1:45284715-45287095	Fetal_Intestine
SE_28811	chr1:45284548-45287049	Fetal_Intestine_Large
SE_29688	chr1:45284555-45286668	Fetal_Muscle
SE_31115	chr1:45284734-45286482	Fetal_Thymus
SE_31689	chr1:45284645-45286772	Gastric
SE_39158	chr1:45284755-45286429	IMR90
SE_39861	chr1:45284706-45286679	K562
SE_41008	chr1:45284558-45287326	Left_Ventricle
SE_42249	chr1:45284561-45287326	Lung
SE_44440	chr1:45284735-45286480	NHDF-Ad
SE_44852	chr1:45284966-45286425	NHLF
SE_46263	chr1:45284554-45286533	Osteoblasts
SE_46831	chr1:45285592-45286605	Ovary
SE_47689	chr1:45286285-45286624	Pancreas
SE_48811	chr1:45284717-45287402	Right_Atrium
SE_49642	chr1:45285654-45286479	Right_Ventricle
SE_50290	chr1:45284625-45286886	Sigmoid_Colon
SE_52471	chr1:45284652-45286782	Small_Intestine
SE_53432	chr1:45284551-45286916	Spleen
SE_55229	chr1:45284703-45286403	Thymus

Enhancer Sequence

AAAGATGAAG ATGAGGAGGC TTAGTGAGGC TGGCTAACTT GCCCAGGGTT ACTCCGCTGG 60
TAAGTGGCAC TGAGGGCTGA CCCCCTTTGC ACTATTCTGG CCTGGTGAGC TCTCTCTGCT 120
CCACCTAGAA GGCCCTTCTT GGTGACCCAA ACACTGCTGG ACCCAAATGC 170