EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS059-02395

Organism

Homo sapiens

Tissue/cell

GM12878

Coordinate

chr1:111716580-111717500

Target genes

Number: 16
Name	Ensembl ID

RP11	ENSG00000261654
LRIF1	ENSG00000121931
CCNT2P1	ENSG00000225672
CEPT1	ENSG00000134255
DRAM2	ENSG00000156171
CHI3L2	ENSG00000064886
DENND2D	ENSG00000162777
CHIA	ENSG00000134216
C1orf88	ENSG00000173947
HIGD1AP12	ENSG00000236012
Y	ENSG00000199890
ATP5F1	ENSG00000116459
WDR77	ENSG00000116455
RAP1A	ENSG00000116473
RP5	ENSG00000231346
U6	ENSG00000201028

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

FOS	MA0476.1	chr1:111717245-111717256	AATGAGTCAGA	-	6.32
MEF2C	MA0497.1	chr1:111716666-111716681	GTTCTCAAAATAGAA	+	6.21
MEOX2	MA0706.1	chr1:111717439-111717449	AGTAATTAAC	+	6.02
TBX20	MA0689.1	chr1:111716989-111717000	TTTCACACCTA	-	6.14
TBX2	MA0688.1	chr1:111716989-111717000	TTTCACACCTA	-	6.32

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

SE_11520

chr1:111707642-111752738

CD20

HEDD

Diseases: AD,Huntington,Obesity,Parkinson,Prostate cancer,Schizophrenia and Sleep disorder
Number of disease enhancers: 1
Chromosome	Start	End

chr1

111716702

111717000

Enhancer Sequence

TTTAAATTAT GCTATTATAA ATTTATAATT CCATAGTGAA TAACCTTGTA CAAACATCAT 60
TTTGTGCAAG TATATCTGTA GGGTAAGTTC TCAAAATAGA AGGCATTTGA ATCCAGTAAT 120
CTAAGAATGA TAATCTCAAA ATTGTAGAAG GTGCTAAGTT TACAAGAGGA AAGGAAAAAC 180
AGCATATGTT TTGCTTCTCA ATCTTTTTGC CCATGTTCTT TTTTTTCACA CTTTCAGGCT 240
TCTAATTTCT GCTGCCCTGT TGTGCATGAG GTTTGTCTCT TCTTGACTGT AAAATTATTT 300
TCAGCAACCC CAAAGCTAAT TCTTGGCTGC TTTCAGTATC TTCTTTGCAG AAGTCTCAGA 360
GTAGTTAACC TAGTAAGAAT AGGAATTTGA GAACTGGAGG AGTTTTTTTT TTCACACCTA 420
TACAATGGCA GACATTAAAT GAATATATCT AAAGAACAGT AAGTTTTACA GAGTCTTAGT 480
GATTTATGTT AACTTTAATT AAAGCACACC ATTTATTTCA TCTGATACTA CAAAGCACTT 540
ATTTCAAGAT TTCATATTTT ATAACAGTGC AATGTAATCC TCTGCTTGAT ACTCAAAATT 600
TAATACCTCC TCAATTTTTT TTTTTTTTGG TGGGAAAGGT TAACCTATGG TTTCAGCCCA 660
ACTTCAATGA GTCAGAAATT TCCTTTGGAA AGGAGGGGTT TTTATTGCTC TTTGAAATTC 720
ATCAAATTAA ATTAAAAGGC TTTGGATTTT ATATGATTTT GCTCATAACA AATTTTTGAT 780
GCCTCCTTTT CCCCTTTCCT CAATATTTGA GATTTTTTTT TTCTATTGTG CATGATAGAG 840
GAATGCTGCT AAGCTTGCAA GTAATTAACT TGAAATTGTT GTGACTAATT CTGCTCTTTT 900
GGCTTTTTGT ACCTAATCAG 920