EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS051-01586

Organism

Homo sapiens

Tissue/cell

Fetal_thymus

Coordinate

chr1:155108870-155109070

Target genes

Number: 35
Name	Ensembl ID

ADAR	ENSG00000160710
KCNN3	ENSG00000143603
PMVK	ENSG00000163344
PBXIP1	ENSG00000163346
PYGO2	ENSG00000163348
SHC1	ENSG00000160691
CKS1B	ENSG00000173207
FLAD1	ENSG00000160688
ZBTB7B	ENSG00000160685
DCST2	ENSG00000163354
DCST1	ENSG00000163357
RP11	ENSG00000232093
ADAM15	ENSG00000143537
EFNA4	ENSG00000243364
EFNA3	ENSG00000143590
Y	ENSG00000202027
EFNA1	ENSG00000169242
SLC50A1	ENSG00000169241
DPM3	ENSG00000179085
HMGN2P18	ENSG00000223452
TRIM46	ENSG00000163462
KRTCAP2	ENSG00000163463
MUC1	ENSG00000185499
FAM189B	ENSG00000160767
SCAMP3	ENSG00000116521
HCN3	ENSG00000143630
CLK2	ENSG00000176444
PKLR	ENSG00000143627
FDPS	ENSG00000160752
RUSC1	ENSG00000160753
MIR555	ENSG00000207720
U6	ENSG00000207134
ASH1L	ENSG00000227773
snoU13	ENSG00000238805
POU5F1P4	ENSG00000237872

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF16	MA0741.1	chr1:155108900-155108911	GGGGGCGGGGC	-	6.02
KLF5	MA0599.1	chr1:155108901-155108911	GGGGCGGGGC	-	6.02

dbSUPER

Number of super-enhancer constituents: 20
ID	Coordinate	Tissue/cell

SE_06471	chr1:155105465-155110736	Brain_Hippocampus_Middle
SE_23168	chr1:155105627-155109010	Colon_Crypt_1
SE_23913	chr1:155105965-155108993	Colon_Crypt_2
SE_25038	chr1:155105867-155109024	Colon_Crypt_3
SE_26314	chr1:155105626-155110559	Duodenum_Smooth_Muscle
SE_26817	chr1:155105592-155109033	Esophagus
SE_27749	chr1:155105346-155110099	Fetal_Intestine
SE_28639	chr1:155105295-155110091	Fetal_Intestine_Large
SE_31531	chr1:155105582-155109033	Gastric
SE_34608	chr1:155105590-155110666	HCT-116
SE_35043	chr1:155105494-155110098	HeLa
SE_36485	chr1:155106132-155110100	HMEC
SE_40872	chr1:155104867-155110927	Left_Ventricle
SE_42320	chr1:155104890-155110776	Lung
SE_49199	chr1:155105616-155109049	Right_Atrium
SE_49607	chr1:155105902-155108993	Right_Ventricle
SE_50340	chr1:155105563-155110973	Sigmoid_Colon
SE_52513	chr1:155105570-155109049	Small_Intestine
SE_57550	chr1:155108335-155109005	VACO_503
SE_65444	chr1:155105907-155109966	Pancreatic_islets

Enhancer Sequence

CGGTAGTGGG AAAGGCTACC AGAGGGAGGT GGGGGCGGGG CAGGAGGAGC AAGAGTGAAA 60
GAGGTTTGGC CGGGCGCGGT GGCTCACGCC TGTAATCCCT GCACTTTGGG AGGCCGAGAC 120
GGGCGGATCA CGAGGTCAGG AGATCCAGAC CATCCTGGCT AACACGGTGA AACCCCGTCT 180
CTACTAAAAA TACAAAAAAT 200