EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS049-00817

Organism

Homo sapiens

Tissue/cell

Fetal_spinal_cord

Coordinate

chr1:235096640-235097520

dbSUPER

Number of super-enhancer constituents: 59
ID	Coordinate	Tissue/cell

SE_00182	chr1:235096120-235101897	Adipose_Nuclei
SE_00983	chr1:235096474-235097221	Adrenal_Gland
SE_00983	chr1:235097261-235098779	Adrenal_Gland
SE_01666	chr1:235096626-235100084	Aorta
SE_02305	chr1:235096364-235100538	Astrocytes
SE_04136	chr1:235096460-235097832	Brain_Anterior_Caudate
SE_06052	chr1:235096043-235100300	Brain_Hippocampus_Middle
SE_07547	chr1:235096391-235100017	Brain_Hippocampus_Middle_150
SE_08384	chr1:235097173-235098864	Brain_Inferior_Temporal_Lobe
SE_09160	chr1:235089274-235102029	CD14
SE_13412	chr1:235096493-235101824	CD34_Primary_RO01536
SE_14852	chr1:235096281-235101639	CD4_Memory_Primary_7pool
SE_19577	chr1:235096550-235100566	CD4p_CD25-_Il17p_PMAstim_Th17
SE_21117	chr1:235097106-235100877	CD8_Memory_7pool
SE_23314	chr1:235096491-235100470	Colon_Crypt_1
SE_23955	chr1:235096605-235097246	Colon_Crypt_2
SE_23955	chr1:235097251-235098787	Colon_Crypt_2
SE_25800	chr1:235089687-235101859	Duodenum_Smooth_Muscle
SE_26806	chr1:235096564-235097115	Esophagus
SE_26806	chr1:235097145-235100451	Esophagus
SE_27663	chr1:235089063-235101555	Fetal_Intestine
SE_28576	chr1:235088850-235101396	Fetal_Intestine_Large
SE_29689	chr1:235096351-235100491	Fetal_Muscle
SE_31235	chr1:235096206-235101509	Fetal_Thymus
SE_31572	chr1:235096504-235100646	Gastric
SE_32492	chr1:235096171-235101826	GM12878
SE_33758	chr1:235092170-235101690	HCC1954
SE_34767	chr1:235092103-235099043	HeLa
SE_36952	chr1:235097341-235100352	HSMMtube
SE_37966	chr1:235095673-235098616	HUVEC
SE_38924	chr1:235096504-235100475	IMR90
SE_40653	chr1:235096334-235100704	Left_Ventricle
SE_41640	chr1:235096428-235097169	LNCaP
SE_41640	chr1:235097171-235098761	LNCaP
SE_42265	chr1:235096397-235099904	Lung
SE_43462	chr1:235096235-235101604	MCF-7
SE_44202	chr1:235096244-235101645	NHDF-Ad
SE_44805	chr1:235096846-235100768	NHLF
SE_45558	chr1:235095403-235101783	Osteoblasts
SE_47119	chr1:235087515-235103374	Panc1
SE_47599	chr1:235096544-235098759	Pancreas
SE_48462	chr1:235097280-235101477	Psoas_Muscle
SE_48697	chr1:235096543-235100576	Right_Atrium
SE_50040	chr1:235096232-235101854	RPMI-8402
SE_50071	chr1:235089709-235100691	Sigmoid_Colon
SE_51271	chr1:235096309-235101796	Skeletal_Muscle
SE_51773	chr1:235097396-235099619	Skeletal_Muscle_Myoblast
SE_52352	chr1:235089712-235101497	Small_Intestine
SE_53330	chr1:235096392-235100521	Spleen
SE_54553	chr1:235096129-235101782	Stomach_Smooth_Muscle
SE_55407	chr1:235096449-235096964	Thymus
SE_55407	chr1:235097231-235099877	Thymus
SE_56760	chr1:235096269-235098211	VACO_400
SE_59259	chr1:235089283-235124733	Ly3
SE_60969	chr1:235059965-235155853	HBL1
SE_61435	chr1:234961094-235124239	Toledo
SE_62329	chr1:235047040-235185428	Tonsil
SE_63542	chr1:235097329-235099682	HSMM
SE_65393	chr1:235092372-235101616	Pancreatic_islets

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I234953

chr1

235089124

235101946

Enhancer Sequence

TCAGGTTGCA ATCCTAGATA AGTAACTACA CATGCTCACT GCCCTGGGCC CAAAGCTGGG 60
GCGAGAGCCT GGAATCAGCG CACCCCCAAG AATTCCGGAA CATGGGAAGA TGCCCATCTT 120
TCATGGAGGG GGCATGCCTC GAAGAGGAAA ATCAGGCAAA AGGCCGTGTG CAAAGCTCCA 180
CGTGCAGGTG CAAGCTGCTT GTCCCTGAGT CTCTGATTGC GAGGAAAGGG GTCACCCGCT 240
GGTCGCACCA CCAACAAAGC CCTGCCATCC TTTGGCTCTG CGCTCACCCA TAATTACTGG 300
GCGTGAGGTG GGAAGGGCCG CCCTTTGGGA CTCAGGTGGT GGGGAGGCTG CAGAACAGAG 360
TCGGCAAGTC AACTCCAATC ACAGTAAGCA TTTTCAAAGA AACACATAAA AATAGCCAGA 420
AGTGGGTCAG CACTTCCAGT GAGGTTAGAG ACAGGAAATT GGGACAGACT CCCGGTCCTG 480
TGTAGAGAGA TAAAAGTTTT ATTTCATAAG TACAAACTCA TACTCTTTCC AATCTGATTC 540
CTCGTTTCTT TTCTTTTGCT TTTTCATCTC CTCTGTCTTT TGGATACACA GGAAACACAC 600
ACACACAGCT AACAAAAACA GTGTGATGTT GGAATCTTGC TCCTTCAGTT CTAAGGTCCT 660
CTTTTTCCTG AAGCTGAAGA AAAAAGATAC TTAAAGAAAA CTTACTTGAG AGTCAGGCAG 720
GAAGGGGAGA TGGGATACAC ACTTTCCCTA TCTTTCAGGT TTCTGCAATC TCAGCGCATG 780
CTGCTTAAGA GGAAAAGAGC AGCAAAGCAG ATGAAAAGCA CTGCATCCTT AAGTGATTTA 840
CCTGTTCCCA AGCAGGCCTG CCTCACACCT GCCTCCCCCC 880