EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS049-00180

Organism

Homo sapiens

Tissue/cell

Fetal_spinal_cord

Coordinate

chr1:27248420-27248940

Target genes

Number: 14
Name	Ensembl ID

ARID1A	ENSG00000117713
PIGV	ENSG00000060642
AL034380.1	ENSG00000241188
ZDHHC18	ENSG00000204160
SFN	ENSG00000175793
RP1	ENSG00000226698
GPN2	ENSG00000142751
NUDC	ENSG00000090273
GPATCH3	ENSG00000198746
NR0B2	ENSG00000131910
RP11	ENSG00000172746
OSTCP2	ENSG00000225294
TRNP1	ENSG00000253368
FAM46B	ENSG00000158246

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Gata1	MA0035.3	chr1:27248929-27248940	TCCTTATCTGT	+	6.14
MAX	MA0058.3	chr1:27248821-27248831	AGCACGTGGT	-	6.02

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

SE_35419

chr1:27247207-27250291

HepG2

Enhancer Sequence

GTAACGGCCC GCGCGGCGTC GGCCCACCCG GCGGCCTTGG CCACGCTCCT TCCGCCCTTC 60
TCTGCCTTCG AGGGCTGAGA CCCACCCCAG CGGCTCGCGG GCTTCTGGGA TGCCCCTACA 120
TTCTCACTGC GCCCAGCTTC CGGCCTGGCC ACCCGCCAGC AGGTCTCACC CGGTTCGCAT 180
CAGTCCCGGG CCCCCGGCGC CCCTCAGTAG TAGCAAATTA TCGCATCCCT GAGCTTAGGA 240
TCCCCCTTTA GTTTCACATA TGCCCCCACC CCCGTTTCCA CTTTGATGGC GGCTTCCAAG 300
GAGCATCCCT TAGTAAGAAC CGTCGCAAAT ATCGTGATTT GGATCCACCA AGGCTTGGGG 360
CGAGCCGTCG AATGTGTGTG GTAGGGGAGC GGGCTGATGT TAGCACGTGG TCTTGTTAGG 420
CCTTGAATGG GGGAATAGGA GGCCTGTGTT CACGATTAGT TTCCACCACC TACCAACTTG 480
GAACCTTTAC ATCTCTCCAA GCCTGAGTTT CCTTATCTGT 520