EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS039-00489

Organism

Homo sapiens

Tissue/cell

ESC_NPC

Coordinate

chr1:120557210-120558610

TF binding sites/motifs

Number: 1

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Myod1

MA0499.1

chr1:120557817-120557830

TGCAGCTGCTCCT

6.15

dbSUPER

Number of super-enhancer constituents: 25
ID	Coordinate	Tissue/cell

SE_00001	chr1:120545720-120570355	Adipose_Nuclei
SE_00811	chr1:120556988-120557599	Adipose_Tissue
SE_00811	chr1:120557727-120558457	Adipose_Tissue
SE_03065	chr1:120555710-120557739	Bladder
SE_03065	chr1:120557761-120559627	Bladder
SE_03434	chr1:120554599-120564678	Brain_Angular_Gyrus
SE_03980	chr1:120549079-120570221	Brain_Anterior_Caudate
SE_07385	chr1:120548934-120569847	Brain_Hippocampus_Middle_150
SE_08816	chr1:120556940-120559534	Brain_Mid_Frontal_Lobe
SE_09137	chr1:120545789-120570232	CD14
SE_12867	chr1:120554695-120560603	CD34_Primary_RO01480
SE_13322	chr1:120545914-120570095	CD34_Primary_RO01536
SE_14057	chr1:120546042-120569730	CD34_Primary_RO01549
SE_18945	chr1:120550673-120570213	CD4p_CD25-_Il17-_PMAstim_Th
SE_26595	chr1:120555685-120560732	Esophagus
SE_29608	chr1:120554644-120561087	Fetal_Muscle
SE_36951	chr1:120555708-120560186	HSMMtube
SE_41312	chr1:120555136-120563468	Left_Ventricle
SE_42341	chr1:120556611-120563456	Lung
SE_43397	chr1:120554561-120565886	MCF-7
SE_45586	chr1:120545832-120570231	Osteoblasts
SE_46953	chr1:120556751-120557698	Ovary
SE_46953	chr1:120557769-120558574	Ovary
SE_49875	chr1:120554642-120565868	RPMI-8402
SE_53396	chr1:120556680-120563463	Spleen

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I120014

chr1

120556661

120559639

Enhancer Sequence

TCACTTAAGC AGATGAAAAC CAGACCCCAA CCCTCACATC TCACTAGCAG CCTGGATTAG 60
TTTACATGTA GCCACTTTAC AGATTTCAAC GAAGCTGGGA TCTGAATAGC AATTCCAATC 120
TATCTGGCAA TGGCTGCAGT TCAGGATCAG TCTCCCTAGT AATACAGGAC AGAAAAATTT 180
GTTCTTTCAC GTTTCCTAAG TGAATAGCCA CTCGTCTACA GAAAAGCTTA AAACAGTGTA 240
GCAGCTTGTG TCAGCTCCAA GATGACTGAA GTCTGAGCAG GAAATAAGCC CCTTTTCCAA 300
ATAAAAGCCA GTGTTCTCTC CCCTTGTTTT CTCCACCGAA TGTTCTGTAT CAGCAGGGTG 360
AGGCCAAATT GCATCCAGGG CTTTGCTGCA GCTCTGTCTT TAGCTTTTTT TTTTTTTTTT 420
TTAAAAACGA GGATTTGGCC ATTCAAAAAA AAACAACAAC AACAACAAAG CAAAATCCCA 480
CCACATACAA GAAGAAAAAG AGAGGCATGC TTTACAAAAC AGCTATTTCA AAATCATGAT 540
TTTTAAAAAA ACTATACAGA ATGTGGAACG AAGGGGAAAA AAAGTCTCAT GTGGGTTGCG 600
TCGGCACTGC AGCTGCTCCT CATTAAAGCT CCTCTTTACT CCCTCTGGGC TAGTTTCCAG 660
CAGAAAATTC TTTGAACAGA ACTCTGCTTT CAACCCACTT TCTTCTTGCG CTGGGCCTCT 720
TGGCCCCCCA ATCCGCAGTG GCAGCCTGCC CTAGCTGAGC TCTAGAGGGG GGAGCTGTCG 780
TTAAGGTAAA TGAGGTAAGG GCAGGGGAAA AAACTAACAA AACCCAGAAA CCAAATTAAG 840
CATCGGTCAG TAACAAAGGT CTGCAGTTTG AAAGGCTCCA AATCAGTCTG TTCTTTCCTG 900
TGACCATAAT GCCAGCTTAG TTTCCTGCCC CCCTACTCTG TCCCCCCTGT TAAAGTAGAT 960
AAAAATAATT GCTAACAGCC AAGGCTAGCT GGAACCAGTG AAAGTTCCTA TGTAACATTC 1020
AATTCCCAAG GCTCCGACTA CAAACTTGTA GGTACCCCAG AGCCTATAGA ATCAAGTCTA 1080
AACTTCTAGG CTGGCATTCA GGAGGCCTAA CCCACCTATT GGTCTAAACT CACTGGTCTC 1140
CCTCCTTTCA GTACCTCCTG GCTGAGGTCT GATGGGCTTG TCAACTTTTT AATTCTGTCA 1200
CTCTGTGTAA AGGTAACTAA CTAGGTTATG CTAATTACCA ACTTTGTTTT AAAAACATGC 1260
ATGAGGACTT CTAGTTAACT TCCTGGTAAA GAGGGGAAAA AAAGAGAAGA AGCTCTGTCA 1320
TACTACTTCT TGCCATTCCC ACTCTACTCT CAACCCCCCC TTCTCTCAAA AAAAAAAGAA 1380
AGAAAAAAAG GAAATACTAT 1400