EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS002-00630

Organism

Homo sapiens

Tissue/cell

A375

Coordinate

chr1:120604160-120605440

Target genes

Number: 6
Name	Ensembl ID

RP5	ENSG00000261662
NOTCH2	ENSG00000134250
FAM72B	ENSG00000188610
RP11	ENSG00000236933
HIST2H2BA	ENSG00000223345
HIST2H2BB	ENSG00000241013

dbSUPER

Number of super-enhancer constituents: 17
ID	Coordinate	Tissue/cell

SE_00001	chr1:120583729-120615071	Adipose_Nuclei
SE_01703	chr1:120604142-120607450	Aorta
SE_09111	chr1:120604182-120606190	Brain_Mid_Frontal_Lobe
SE_09137	chr1:120583627-120615037	CD14
SE_13276	chr1:120603208-120606066	CD34_Primary_RO01480
SE_26595	chr1:120603801-120608580	Esophagus
SE_30193	chr1:120599700-120605946	Fetal_Muscle
SE_33878	chr1:120603261-120607378	HCC1954
SE_35829	chr1:120591362-120613803	HMEC
SE_36951	chr1:120590487-120613604	HSMMtube
SE_42087	chr1:120603947-120606220	LNCaP
SE_42341	chr1:120604010-120606965	Lung
SE_49282	chr1:120604001-120606338	Right_Atrium
SE_51758	chr1:120603720-120605727	Skeletal_Muscle_Myoblast
SE_55700	chr1:120600969-120614862	u87
SE_63545	chr1:120603720-120605768	HSMM
SE_64278	chr1:120601063-120608571	NHEK

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I120061

chr1

120603936

120606014

Enhancer Sequence

CAATATTATC ATCATGTTTT CCTTACTTCA CAAAATACAC ACATACATTC ATCATATGAA 60
TAAACATATA TAATAAGGGT GAGAGAGCTA CTCTTAACCC AGAAACAGGT TCTGCAACAC 120
CCATAGATCC AACCTGTCTT TATGCAACAA TGAGTCCATC TTGGCAAGAT GTTTGGCTGA 180
TGTATTCAAA TAACCCAGAG TTCTGCCAGC TGCCAGTATC CTGCAGAAGG AACTGACTCG 240
GAGACCAGAA ACTGCCCTAG GCAAGCCTCC AGGGAAAGGT GCTTCAGTCC AATGGGAAGA 300
AAAACCCAGC CCCTCACTGC CTGGCCAGAG GACCCGGGGT ACCATGGCTG GAGCGACGTA 360
GCTGGCTGGA AATGCGAGAG GGGCAAGGGA CACTAAGGTG AACCCCCAAG AGCTTGTTCA 420
ATCATACCTA GTAAAGGCCA AACTATTGGG GAGCTAGTAG AACAGGGTTT TGCCAAGACA 480
AGTACAAAAG GGTGAGGGAG ATATTAGTAT GATTAATCAA TGCCACCTGA GGCAGCAACT 540
CTGGGTGTGT CCACACCACA CTTCAGTCAC TGCCTGGCTG TGACGAGAAG TTCCTTCAGC 600
CACTGCCACT GAGAACTGCA TCTTCCAAGG AAGATATCTC CACCATAACT TGTCCTAGTT 660
CAGGCTTGGC ATTCGGGACT AAGAACACAG CACTCTCTCT TGCCGCAAAC CCACTAACAG 720
ACATAATAGA CACCACAACA TGTGCCAAAT TTATATTTAC ACCCTCACCA GACAAAGGGG 780
TTTTTGTCTT TTCCCCAAGC CAAGTTCTAA TACTTCTAAA TTACAACACA GAAAGAGGAA 840
AATGGCAGAC AGCTCACGAC AGCAGACAAG CCCAGCAAGG GTGAGCTGGA GGTCGCCTTT 900
CCCTGGTGGT ATTAAGACCT GAAGTTTACT CCCAAGACCC TATAGCTCCG AGTCACCCTG 960
ACTGCAGGAA ACTGCTTTCA GAGAGCATAG ATAAATGATA AAATAACTGT ATTTCATATT 1020
CCTAATTGTG TGCTTATCTG TCTTGTCTCC ATGATGATGT CAGCTCCTTG GGAGCAGGAC 1080
CATATTTTCT ACTTGGTCAA TGATTCCCAC ACATCTAGAA GAGGAGAATA CCCTGTACTT 1140
GCTACCACAT GATGCCAAGG GAAGCACACA AATTAAGTGT GACAACACAC CACAATGCTC 1200
CCCCAATACA CCACTAAGAC AGCAGAGCTA CAAAGATAGC AAATGTTAGT GCCAAGGGCT 1260
AGTGATCCTA CCAGTGAATT 1280