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BPAC: A universal model for prediction of transcription factor binding sites based on chromatin accessibility.

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   Prediction

    We provide two approaches to use BPAC. One is to make the prediction online, and the other is to download the program and make the prediction offline. Due to the computer power limit, the online version allows only less than 1000 candidate sites as input. Therefore, we recommend the offline version. Detailed usage instruction please see FAQ.

Online version:



Reference genome:     �
hg19
mm9

Bam file (URL of sorted alignment file):     �



Is it paired end?    �     

Region of interest:

Name of transcription factor (TF):    �   


                                                                                                                   



  Online prediction result





Offline version:

Training

Generate features and labels → Construct model

Test

Generate features on test data → Predict using trained model → Evaluation of prediction



Installation and usage instruction is at here

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Maintained by Dr. Jiang Qian and Dr. Sheng Liu at the Qian's Bioinformatics Lab, Johns Hopkins School of Medicine